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The map label for this gene is ycaD [C]

Identifier: 59711587

GI number: 59711587

Start: 1075323

End: 1076483

Strand: Reverse

Name: ycaD [C]

Synonym: VF_0980

Alternate gene names: 59711587

Gene position: 1076483-1075323 (Counterclockwise)

Preceding gene: 59711589

Following gene: 59711586

Centisome position: 37.15

GC content: 39.79

Gene sequence:

>1161_bases
GTGGAACAAACAACATCAACTCAATCACAATCTGGTCTACTTATTCCTGTGATTGCTCTCTCTTTATTTGCTATTGCATC
AGGGTATTTAATGAGCTTAATTCCCCTAATGTTAAGTCAATATGGGATTGAGGCGAAATACGCCAGTTGGTTAGCCAGTG
CTTTTTATGCAGGTCTACTTGTTGGTGCCGGTGTTATCGAACCTTTTGTGGCTCGTTTAGGCCATAAAAACTCATTTGTT
TTATTCTTAGCCCTGCTTGCAGCAACAATTATAGCTCTTCCTGCTATTCCTGATGAATTATTTTGGATGGTAGCAAGATT
CGTTGCCGGTATCGCAGTTGCAGGTGTATTTGTTGTTGTTGAGTCTTGGCTATTAATTGGCGATGCAGAAAGTCGACCAA
AACGTTTAGGCTTATACATGGGTGCGCTTTATGGTGGTTCATCTCTAGGACAACTAGGTATCGGCTTTATCGGTATTGAG
GGCCTACTACCATATTACATGATCATTGGCTTAATCATGATGGCTATTGCTTGTTTATTATTTGGTAAAGGGGCACAACC
TCAAGTTCAACACCACAATGTTTTGAACTTTAAACAAATACTAAAACTAAACAAAGCTTCTATCATGGGCTGTGTCGTGT
CTGGCCTACTACTGGGTGCAGTATATGGTTTAATGCCGTTAGAATTGAAACATCGCAATATTAATACTGCACAAATCGGC
AGTCTAATGGCTCTTATTGTTCTTGGTGGCATGGCAGTACAACCGATTGTTTCTTACTTATCGAAGCATTTTGCTAAAAC
ACTATTAATGGCTCTATTTTGTATTTTAGGTGTTTTCTCTGTTGGTTTAACTGCATTGAGTGATCACGCTGCTGTACTAG
CAGTAGCTTTAGTTCTTCTTGGTATGGCCGCGTTTGCACTTTATCCAATTGCGATCTCTCTTGGATGTGATCAACTGGAT
GAATCTTATATTGTGTCAGCAACACAAGTAATGCTTTTTAGCTACAGTATTGGTTCGGTATGTGGCCCTGTTATGGCGAA
TACATTAATGAATACTGCCGAAGGTCTTATGAGCTACTTGTTTGCTATTTTATTAGCAACAGCTATTTACATGATATTCG
CTAATATTCGTCAACACCGTCCGATGGTTGCCGGCGAATAA

Upstream 100 bases:

>100_bases
TTATCTTTACGAGAAAAATTACTCGTTTTACTTGGTTACTCTTTAGCCTCATAGTCGCGGAAAATTACTTCCTATCTATT
ACTTTTTTTGAGGCACTGCG

Downstream 100 bases:

>100_bases
TTCCTTAGATTCTTATTACAGTGCGCGCTACAATGCGCACTTAAATAATTATGAGATATTAAAATGGAAGACGCACAATA
CGTTGTTGAGTGGGAAGAAA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MEQTTSTQSQSGLLIPVIALSLFAIASGYLMSLIPLMLSQYGIEAKYASWLASAFYAGLLVGAGVIEPFVARLGHKNSFV
LFLALLAATIIALPAIPDELFWMVARFVAGIAVAGVFVVVESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIE
GLLPYYMIIGLIMMAIACLLFGKGAQPQVQHHNVLNFKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINTAQIG
SLMALIVLGGMAVQPIVSYLSKHFAKTLLMALFCILGVFSVGLTALSDHAAVLAVALVLLGMAAFALYPIAISLGCDQLD
ESYIVSATQVMLFSYSIGSVCGPVMANTLMNTAEGLMSYLFAILLATAIYMIFANIRQHRPMVAGE

Sequences:

>Translated_386_residues
MEQTTSTQSQSGLLIPVIALSLFAIASGYLMSLIPLMLSQYGIEAKYASWLASAFYAGLLVGAGVIEPFVARLGHKNSFV
LFLALLAATIIALPAIPDELFWMVARFVAGIAVAGVFVVVESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIE
GLLPYYMIIGLIMMAIACLLFGKGAQPQVQHHNVLNFKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINTAQIG
SLMALIVLGGMAVQPIVSYLSKHFAKTLLMALFCILGVFSVGLTALSDHAAVLAVALVLLGMAAFALYPIAISLGCDQLD
ESYIVSATQVMLFSYSIGSVCGPVMANTLMNTAEGLMSYLFAILLATAIYMIFANIRQHRPMVAGE
>Mature_386_residues
MEQTTSTQSQSGLLIPVIALSLFAIASGYLMSLIPLMLSQYGIEAKYASWLASAFYAGLLVGAGVIEPFVARLGHKNSFV
LFLALLAATIIALPAIPDELFWMVARFVAGIAVAGVFVVVESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIE
GLLPYYMIIGLIMMAIACLLFGKGAQPQVQHHNVLNFKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINTAQIG
SLMALIVLGGMAVQPIVSYLSKHFAKTLLMALFCILGVFSVGLTALSDHAAVLAVALVLLGMAAFALYPIAISLGCDQLD
ESYIVSATQVMLFSYSIGSVCGPVMANTLMNTAEGLMSYLFAILLATAIYMIFANIRQHRPMVAGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=358, Percent_Identity=32.9608938547486, Blast_Score=164, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41025; Mature: 41025

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA