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The map label for this gene is cydB [H]

Identifier: 59711561

GI number: 59711561

Start: 1050580

End: 1051716

Strand: Direct

Name: cydB [H]

Synonym: VF_0954

Alternate gene names: 59711561

Gene position: 1050580-1051716 (Clockwise)

Preceding gene: 59711560

Following gene: 59711562

Centisome position: 36.26

GC content: 40.99

Gene sequence:

>1137_bases
ATGTTTGATTACGAAGTATTGCGATTTGTTTGGTGGGCATTAATCGGTGTATTGCTGATTGGCTTCGCTGTAACAGATGG
ATTCGATATGGGTGTTGGTGCACTAGTACCTGTTATCGGTAAAACAGATTCAGAACGTCGAGTTATGATTAACTCAATTG
CCCCTCACTGGGATGGTAACCAAGTATGGTTAATCACAGCAGGTGGTGCATTATTCGCAGCATGGCCATTAGTATACGCA
ACATCATTCTCAGGTTTTTACCTAGCAATGATCGTAACGTTAGCAGCACTATGGTTCCGTCCTGTTGGATTTGATTACCG
TTCTAAAATTGAAGATAAGCGCTGGCGTTCAGCGTGGGATGCAGCGATCTTTATTGGTAGCTTCGTTCCACCAGTTATCT
TTGGTGTTGCGTTTGGTAACCTTTTACAAGGCGTACCATTCCAACTAGATAACCTAATGATGCCAACATACCATGGTTCA
TTCTTTGGTCTGTTAAACCCATTTGCACTAGTGTGTGGCCTAGTAAGTTCATTTATGTTCATTACTCAAGGCGCTACATG
GCTACAAATGAAAACAACGGGTGAGTTGCACACTCGCGCACGAAATATTGCGATGATCTTTAGTGCTCTTGTGGTTGTTT
TGTTTGTAATTGCTGGTATCTGGGCTCAAAGCATTGAAGGTTATGTGATTGTAGGTAGCTTAGATCACTTTGCTCCGTCA
AACCCATTAAATAAAGAAGTCGCTCGTGAAGTAGGTGCTTTGTTCCATAACTTCAACGAATACCCATTACTATGGATTGC
TCCAGCATTAGCTGTGATCATGCCTATCGTTACAATTATTGCATCTCGTGCAAATATTGGCGGTCTTGCGTTCTTAAGCT
CAAGCTTAACGAACGCTGGTGTTATCTTAACTTCTGGTTTTGCGTTATTCCCATTCGTAATGCCATCGAGCTTGAACCCT
AACCATAGCTTAACTATGTGGGATTCAACTTCAAGTGAGTTAACACTTACGCTAATGACATACGTTGCTATCGTAATGGT
ACCAATTATTCTTGCTTACACTATCTGGACGTACATTAAAATGTTTGGTCGTCTTGATAATAAATTCATTGAAGAGAACA
AAACGTCTCTATACTAA

Upstream 100 bases:

>100_bases
GTAGCTTGAAAACAGGCCGCTACCACTTTGAGCAAAATGGTCAAGATTCAGAAGCGAAATTAACTCGCCAAGTAGAAGCA
TAAAAACGGAGATTTGAGCA

Downstream 100 bases:

>100_bases
GGAGTATTTACTATGTGGTATTTCGCATGGATTCTAGGTGTTCTACTTGCTTGTGCATTTGGTATCATCAATGCTCTTTG
GTTAGAGCACTCAGAAATGA

Product: cytochrome d terminal oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFDYEVLRFVWWALIGVLLIGFAVTDGFDMGVGALVPVIGKTDSERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYLAMIVTLAALWFRPVGFDYRSKIEDKRWRSAWDAAIFIGSFVPPVIFGVAFGNLLQGVPFQLDNLMMPTYHGS
FFGLLNPFALVCGLVSSFMFITQGATWLQMKTTGELHTRARNIAMIFSALVVVLFVIAGIWAQSIEGYVIVGSLDHFAPS
NPLNKEVAREVGALFHNFNEYPLLWIAPALAVIMPIVTIIASRANIGGLAFLSSSLTNAGVILTSGFALFPFVMPSSLNP
NHSLTMWDSTSSELTLTLMTYVAIVMVPIILAYTIWTYIKMFGRLDNKFIEENKTSLY

Sequences:

>Translated_378_residues
MFDYEVLRFVWWALIGVLLIGFAVTDGFDMGVGALVPVIGKTDSERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYLAMIVTLAALWFRPVGFDYRSKIEDKRWRSAWDAAIFIGSFVPPVIFGVAFGNLLQGVPFQLDNLMMPTYHGS
FFGLLNPFALVCGLVSSFMFITQGATWLQMKTTGELHTRARNIAMIFSALVVVLFVIAGIWAQSIEGYVIVGSLDHFAPS
NPLNKEVAREVGALFHNFNEYPLLWIAPALAVIMPIVTIIASRANIGGLAFLSSSLTNAGVILTSGFALFPFVMPSSLNP
NHSLTMWDSTSSELTLTLMTYVAIVMVPIILAYTIWTYIKMFGRLDNKFIEENKTSLY
>Mature_378_residues
MFDYEVLRFVWWALIGVLLIGFAVTDGFDMGVGALVPVIGKTDSERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYLAMIVTLAALWFRPVGFDYRSKIEDKRWRSAWDAAIFIGSFVPPVIFGVAFGNLLQGVPFQLDNLMMPTYHGS
FFGLLNPFALVCGLVSSFMFITQGATWLQMKTTGELHTRARNIAMIFSALVVVLFVIAGIWAQSIEGYVIVGSLDHFAPS
NPLNKEVAREVGALFHNFNEYPLLWIAPALAVIMPIVTIIASRANIGGLAFLSSSLTNAGVILTSGFALFPFVMPSSLNP
NHSLTMWDSTSSELTLTLMTYVAIVMVPIILAYTIWTYIKMFGRLDNKFIEENKTSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=64.6437994722955, Blast_Score=507, Evalue=1e-145,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=53.5620052770449, Blast_Score=417, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41821; Mature: 41821

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEVLRFVWWALIGVLLIGFAVTDGFDMGVGALVPVIGKTDSERRVMINSIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCC
QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWFRPVGFDYRSKIEDKRWRSAWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAIFIGSFVPPVIFGVAFGNLLQGVPFQLDNLMMPTYHGSFFGLLNPFALVCGLVSSFMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ITQGATWLQMKTTGELHTRARNIAMIFSALVVVLFVIAGIWAQSIEGYVIVGSLDHFAPS
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
NPLNKEVAREVGALFHNFNEYPLLWIAPALAVIMPIVTIIASRANIGGLAFLSSSLTNAG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
VILTSGFALFPFVMPSSLNPNHSLTMWDSTSSELTLTLMTYVAIVMVPIILAYTIWTYIK
EEEECCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDNKFIEENKTSLY
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFDYEVLRFVWWALIGVLLIGFAVTDGFDMGVGALVPVIGKTDSERRVMINSIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCC
QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWFRPVGFDYRSKIEDKRWRSAWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAIFIGSFVPPVIFGVAFGNLLQGVPFQLDNLMMPTYHGSFFGLLNPFALVCGLVSSFMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ITQGATWLQMKTTGELHTRARNIAMIFSALVVVLFVIAGIWAQSIEGYVIVGSLDHFAPS
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
NPLNKEVAREVGALFHNFNEYPLLWIAPALAVIMPIVTIIASRANIGGLAFLSSSLTNAG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
VILTSGFALFPFVMPSSLNPNHSLTMWDSTSSELTLTLMTYVAIVMVPIILAYTIWTYIK
EEEECCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDNKFIEENKTSLY
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]