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The map label for this gene is cydA [H]

Identifier: 59711560

GI number: 59711560

Start: 1048973

End: 1050562

Strand: Direct

Name: cydA [H]

Synonym: VF_0953

Alternate gene names: 59711560

Gene position: 1048973-1050562 (Clockwise)

Preceding gene: 59711559

Following gene: 59711561

Centisome position: 36.2

GC content: 40.57

Gene sequence:

>1590_bases
ATGATCACTGATGTAGTGGAGTTATCGCGTCTGCAATTTGCAATGACAGCGATGTATCACTTCCTATTCGTTCCTCTGAC
TCTAGGTATGGCCTTTTTATTGGCTATTATGGAGTCTTTATATGTAATGACCGACAAACAAATCTACAAGGACATGACAA
AGTTCTGGGGTAAATTGTTCGGTATTAACTTTGCACTAGGTGTAGCAACTGGTTTAACAATGGAATTCCAGTTTGGTACT
AACTGGTCTTACTATTCACACTACGTTGGTGATATTTTCGGGGCTCCTCTTGCCATCGAAGCACTAATGGCTTTCTTCTT
AGAATCTACTTTTGTTGGTTTATTCTTCTTTGGTTGGGATCGTTTATCTAAACGTCAACACCTTGCAGTAACTTGGTTAG
TTGCTTTAGGTTCAAACTTCTCAGCACTTTGGATTCTAGTAGCTAACGGCTGGATGCAAAACCCAGTAGGTGCAGAATTT
AACTTTGAAACAATGCGTATGGAAATGGTGAGCTTCGCTGAAGTTGTACTAAACCCAGTAGCACAAGTTAAATTTGTTCA
CACTGTAGCATCAGGTTACACATGTGGCGCAATGTTCGTACTAGGTATCAGTTCTTACTACCTACTAAAAGGCCGTGATA
TTGCATTTGCACGTCGTTCATTCGCAATCGCAGCTTCTTTTGGTATGGCATCAATCCTATCTGTAATGGTTCTTGGTGAT
GAGTCTGGCTATGAGCTAGGTGAAGTACAACAAGTTAAACTTGCTGCTATCGAAGCTGAATGGCATACAGAAGAAGCGCC
TGCTGCGTTTACTGTGATTGGTTTACCAAATCAAGAATCTATGGAAACAGATTACGCAATTAAGATCCCATATGTAATGG
GTATTATTGCAACTCGTTCTCTAGATAAGCAAGTGACTGGTTTACGTGATCTTAAAGACCAACATGAACTTCGCATCCGA
AACGGTATGGTTGCGTACGGTCTACTTGAGAAATTACGTAATGGTGAGAAAACACCTGAAAACATTGCTGCATTTGATGA
TGTAAAACATGACTTAGGTTATGGCTTACTTCTTAAGCGTTATACAGATAACGTAGTTGATGCAACAGAAGACCAAATTA
AAGCGGCTGCGGATGATTCTATCCCAACTGTATGGCCATTGTTCTTCTCATTCCGAATCATGGTTGCGTGTGGCGTATTA
ATGCTTGGTATCTTTGCTTTTGCATTTGTTCAAACATGTCGTCAAAAAATCGAAGCGAAGCCTTGGTTACTTAAAGCTGC
ACTATTTGGTATGCCATTACCATGGATTGCGATTGAAGCAGGTTGGTTCGTAGCAGAATATGGTCGTCAACCATGGGCTG
TTGGTGAGATCTTACCTGTAAACGTAGCGGCATCAGCACTAACTGCAACTGAAATTCTAATTTCAATGGCTGCAATTATT
GGCTTGTACACGATTTTCTTGATTGCTGAAGTTTACCTAATGGTTAAATTTGCTCGTAAAGGTCCAAGTAGCTTGAAAAC
AGGCCGCTACCACTTTGAGCAAAATGGTCAAGATTCAGAAGCGAAATTAACTCGCCAAGTAGAAGCATAA

Upstream 100 bases:

>100_bases
TAATACGCTAATGAATATTAAGACTACATAAATAAGGTGTTTACGCTCACTTAAAAGTATGGAAGTACTGTGTCATTCAG
CCTGACACAAAGGAGTTCTC

Downstream 100 bases:

>100_bases
AAACGGAGATTTGAGCAATGTTTGATTACGAAGTATTGCGATTTGTTTGGTGGGCATTAATCGGTGTATTGCTGATTGGC
TTCGCTGTAACAGATGGATT

Product: cytochrome d terminal oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEALMAFFLESTFVGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEF
NFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTCGAMFVLGISSYYLLKGRDIAFARRSFAIAASFGMASILSVMVLGD
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVIGLPNQESMETDYAIKIPYVMGIIATRSLDKQVTGLRDLKDQHELRIR
NGMVAYGLLEKLRNGEKTPENIAAFDDVKHDLGYGLLLKRYTDNVVDATEDQIKAAADDSIPTVWPLFFSFRIMVACGVL
MLGIFAFAFVQTCRQKIEAKPWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVNVAASALTATEILISMAAII
GLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQNGQDSEAKLTRQVEA

Sequences:

>Translated_529_residues
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEALMAFFLESTFVGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEF
NFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTCGAMFVLGISSYYLLKGRDIAFARRSFAIAASFGMASILSVMVLGD
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVIGLPNQESMETDYAIKIPYVMGIIATRSLDKQVTGLRDLKDQHELRIR
NGMVAYGLLEKLRNGEKTPENIAAFDDVKHDLGYGLLLKRYTDNVVDATEDQIKAAADDSIPTVWPLFFSFRIMVACGVL
MLGIFAFAFVQTCRQKIEAKPWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVNVAASALTATEILISMAAII
GLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQNGQDSEAKLTRQVEA
>Mature_529_residues
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEALMAFFLESTFVGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEF
NFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTCGAMFVLGISSYYLLKGRDIAFARRSFAIAASFGMASILSVMVLGD
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVIGLPNQESMETDYAIKIPYVMGIIATRSLDKQVTGLRDLKDQHELRIR
NGMVAYGLLEKLRNGEKTPENIAAFDDVKHDLGYGLLLKRYTDNVVDATEDQIKAAADDSIPTVWPLFFSFRIMVACGVL
MLGIFAFAFVQTCRQKIEAKPWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVNVAASALTATEILISMAAII
GLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQNGQDSEAKLTRQVEA

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=517, Percent_Identity=74.468085106383, Blast_Score=812, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=61.3095238095238, Blast_Score=641, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59029; Mature: 59029

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALMAFFLESTFVGLFFFGWD
CCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEFNFETMRMEMVSFAEVVLNPV
HHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQVKFVHTVASGYTCGAMFVLGISSYYLLKGRDIAFARRSFAIAASFGMASILSVMVLGD
HHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECC
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVIGLPNQESMETDYAIKIPYVMGIIATRS
CCCCCCCCHHEEHEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHH
LDKQVTGLRDLKDQHELRIRNGMVAYGLLEKLRNGEKTPENIAAFDDVKHDLGYGLLLKR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHH
YTDNVVDATEDQIKAAADDSIPTVWPLFFSFRIMVACGVLMLGIFAFAFVQTCRQKIEAK
HCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVNVAASALTATEILISMAAII
CHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
GLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQNGQDSEAKLTRQVEA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALMAFFLESTFVGLFFFGWD
CCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEFNFETMRMEMVSFAEVVLNPV
HHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQVKFVHTVASGYTCGAMFVLGISSYYLLKGRDIAFARRSFAIAASFGMASILSVMVLGD
HHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECC
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVIGLPNQESMETDYAIKIPYVMGIIATRS
CCCCCCCCHHEEHEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHH
LDKQVTGLRDLKDQHELRIRNGMVAYGLLEKLRNGEKTPENIAAFDDVKHDLGYGLLLKR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHH
YTDNVVDATEDQIKAAADDSIPTVWPLFFSFRIMVACGVLMLGIFAFAFVQTCRQKIEAK
HCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVNVAASALTATEILISMAAII
CHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
GLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQNGQDSEAKLTRQVEA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]