Click here to switch to the map view.

The map label for this gene is cmoA [H]

Identifier: 59711555

GI number: 59711555

Start: 1043260

End: 1043988

Strand: Reverse

Name: cmoA [H]

Synonym: VF_0948

Alternate gene names: 59711555

Gene position: 1043988-1043260 (Counterclockwise)

Preceding gene: 59711573

Following gene: 59711554

Centisome position: 36.03

GC content: 38.82

Gene sequence:

>729_bases
ATGGCTAACCCTGATACTATTTTTTCAACACCAATCGATAAAATTGGTGATTTCACATTTGATGAACGCGTTGCTGAAGT
TTTTCCTGACATGATCCAACGATCAATTCCAGGCTACAGCAATATTATTTCAGCCATTGGTATGCTGGCCGAGCGCTATG
CTAAGCCACATTCAAATGTTTATGATTTAGGTTGTTCACTTGGAGCGGCAACGCTTTCAATGCGCCGAAGTATCGATCAA
GAAGGTTGCCAAATTATTGGAGTGGATAATTCATCCGCTATGGTCGAGCGTTGTCGCTTACTTATTAATGCTTACCGCTC
AGATACACCAGTGACGATTCTAGAAGCAGATATACGTGATGTTGATATTCAAGATGCTTCAGTTGTTGTTTTAAATTTCA
CATTGCAATTTTTAGCGCCTGCAGACCGTCACGCATTACTTGAAAAAATTTATGCTGGCTTGCGTCCTGGTGGCATTTTA
ATTTTATCTGAGAAATACATTTTTGAAGATGAAAATGCTAACGAATTACTGATTGACCTACATCATGACTTTAAACGTGC
AAATGGTTACAGCGAACTAGAAATAAGTCAAAAACGCAGCGCTATTGAAAACGTAATGCTACCTGACACCATCGATGTGC
ACAAAAAGCGCTTTAATGAGATTGGCTTTAAAAGCTCTGAAGTATGGTTCCAATGTTTTAACTTCGGTTCAATGTTTGCC
ATCAAATAA

Upstream 100 bases:

>100_bases
TGCTATGAATCATGCCGTTCTAGGTAAGTAGAGTTCAATATTTACCTAGAGTTGTATGAGTTTCGTATGGATGTCATAAC
CAAGCCTTAGTGAGAATCCC

Downstream 100 bases:

>100_bases
CCCTGTTTTGTTATCACCAACTATATAAAGATATTTATGTTTAATTTTGCTAATTTTTATCAACTAATTGCCCAAGATAC
CGTTCTTCAACCTTGGTTAA

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MANPDTIFSTPIDKIGDFTFDERVAEVFPDMIQRSIPGYSNIISAIGMLAERYAKPHSNVYDLGCSLGAATLSMRRSIDQ
EGCQIIGVDNSSAMVERCRLLINAYRSDTPVTILEADIRDVDIQDASVVVLNFTLQFLAPADRHALLEKIYAGLRPGGIL
ILSEKYIFEDENANELLIDLHHDFKRANGYSELEISQKRSAIENVMLPDTIDVHKKRFNEIGFKSSEVWFQCFNFGSMFA
IK

Sequences:

>Translated_242_residues
MANPDTIFSTPIDKIGDFTFDERVAEVFPDMIQRSIPGYSNIISAIGMLAERYAKPHSNVYDLGCSLGAATLSMRRSIDQ
EGCQIIGVDNSSAMVERCRLLINAYRSDTPVTILEADIRDVDIQDASVVVLNFTLQFLAPADRHALLEKIYAGLRPGGIL
ILSEKYIFEDENANELLIDLHHDFKRANGYSELEISQKRSAIENVMLPDTIDVHKKRFNEIGFKSSEVWFQCFNFGSMFA
IK
>Mature_241_residues
ANPDTIFSTPIDKIGDFTFDERVAEVFPDMIQRSIPGYSNIISAIGMLAERYAKPHSNVYDLGCSLGAATLSMRRSIDQE
GCQIIGVDNSSAMVERCRLLINAYRSDTPVTILEADIRDVDIQDASVVVLNFTLQFLAPADRHALLEKIYAGLRPGGILI
LSEKYIFEDENANELLIDLHHDFKRANGYSELEISQKRSAIENVMLPDTIDVHKKRFNEIGFKSSEVWFQCFNFGSMFAI
K

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U) [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family [H]

Homologues:

Organism=Escherichia coli, GI1788177, Length=242, Percent_Identity=67.3553719008264, Blast_Score=361, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216
- InterPro:   IPR005271 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27221; Mature: 27090

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPDTIFSTPIDKIGDFTFDERVAEVFPDMIQRSIPGYSNIISAIGMLAERYAKPHSNV
CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCH
YDLGCSLGAATLSMRRSIDQEGCQIIGVDNSSAMVERCRLLINAYRSDTPVTILEADIRD
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
VDIQDASVVVLNFTLQFLAPADRHALLEKIYAGLRPGGILILSEKYIFEDENANELLIDL
CCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCEEEEEE
HHDFKRANGYSELEISQKRSAIENVMLPDTIDVHKKRFNEIGFKSSEVWFQCFNFGSMFA
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEE
IK
EC
>Mature Secondary Structure 
ANPDTIFSTPIDKIGDFTFDERVAEVFPDMIQRSIPGYSNIISAIGMLAERYAKPHSNV
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCH
YDLGCSLGAATLSMRRSIDQEGCQIIGVDNSSAMVERCRLLINAYRSDTPVTILEADIRD
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
VDIQDASVVVLNFTLQFLAPADRHALLEKIYAGLRPGGILILSEKYIFEDENANELLIDL
CCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCEEEEEE
HHDFKRANGYSELEISQKRSAIENVMLPDTIDVHKKRFNEIGFKSSEVWFQCFNFGSMFA
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEE
IK
EC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA