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The map label for this gene is motY [H]

Identifier: 59711533

GI number: 59711533

Start: 1021688

End: 1022566

Strand: Direct

Name: motY [H]

Synonym: VF_0926

Alternate gene names: 59711533

Gene position: 1021688-1022566 (Clockwise)

Preceding gene: 59711529

Following gene: 59711543

Centisome position: 35.26

GC content: 36.29

Gene sequence:

>879_bases
ATGAAAAAAATATTTGTTACATCTGCTTTATTAGTGAGCTTTTTGATTGCTACTCCTGTATTAGCAAATAAGAATTATGT
CGCTAAGCCAGAGCAATCGAAGTGGACGATGTTAGAAAACTCGCCTTTAGAGTGTCGTTTGTCTCATAACATTCCTAATT
ATGGTAGTGCACAGTTTTCATCTTATGCAAATAAGAAGATGAATCTGGATTTTGAATTAAAAATGAACCGCCCAATGGGT
GAAACTCGTGCTGTTAATCTTGTGTCTATGCCTGCTCGCTGGATGCCGGGTGATGGTGCAGAAAGTATGTTGAATTTAAA
GTTCTTTAAACAATTTGATGGCTATGTTGGTGGTCCAACAGCTTGGTCTATGCTTGCTGAACTTGAAAGTGGTCGATTCC
CAACATTTACTTATGCTGATTGGCAAAGTCCTAAGCAAATGATTGAAGTGGCGTTATCACCCGTTTTATTTCAAGAGCAA
TATAATGTGTTCAGTATGTGTATTGCTAACTTATTGCCATACAGTTTTGAAGACATCTCATTCACTATTTTGCATTTTGA
TAAAAACAGTGATGAATTAAATAAGGCATCAAAAAAACGTTTGTCACAAATTGCTGATTTTATTAAATACACTAAAGATG
TGGATTTAGTGTTGGTAGCAACTTATACCGACTCTAGTGGTGGTAAAAATGTGAACCAACAAGTGTCAGAAAGACGTGCG
TTAAAATTACAAAATTACTTTGAGTCAATTGGTTTACCTGCTGATCGTATTCGTGTTCATTCGTATGGTGAACGTCGTCC
AATTGCAGATAACGCAACACCGATTGGTAAGAATAAAAACCGTCGTGTTGTCATTTCTCTAGGACGAACAATTATCTAA

Upstream 100 bases:

>100_bases
TTAGTATCTAACTGAAATTGGCAAGTTGTAAGTAATTATTGGTCTAATTATTGCTTTATTAATAGCATCGTCAACGGCAT
GACCCATAGATTTAGGTATT

Downstream 100 bases:

>100_bases
TTATTCGTTTTAACATCATCATAAAAAGACGCCTCATAGTAGGCGTCTTTTTTATTGTAATTTGAAACTGGCGATTAACT
CGCATTGAACTGTAGTATCA

Product: flagellar motor protein MotY

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKKIFVTSALLVSFLIATPVLANKNYVAKPEQSKWTMLENSPLECRLSHNIPNYGSAQFSSYANKKMNLDFELKMNRPMG
ETRAVNLVSMPARWMPGDGAESMLNLKFFKQFDGYVGGPTAWSMLAELESGRFPTFTYADWQSPKQMIEVALSPVLFQEQ
YNVFSMCIANLLPYSFEDISFTILHFDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDSSGGKNVNQQVSERRA
LKLQNYFESIGLPADRIRVHSYGERRPIADNATPIGKNKNRRVVISLGRTII

Sequences:

>Translated_292_residues
MKKIFVTSALLVSFLIATPVLANKNYVAKPEQSKWTMLENSPLECRLSHNIPNYGSAQFSSYANKKMNLDFELKMNRPMG
ETRAVNLVSMPARWMPGDGAESMLNLKFFKQFDGYVGGPTAWSMLAELESGRFPTFTYADWQSPKQMIEVALSPVLFQEQ
YNVFSMCIANLLPYSFEDISFTILHFDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDSSGGKNVNQQVSERRA
LKLQNYFESIGLPADRIRVHSYGERRPIADNATPIGKNKNRRVVISLGRTII
>Mature_292_residues
MKKIFVTSALLVSFLIATPVLANKNYVAKPEQSKWTMLENSPLECRLSHNIPNYGSAQFSSYANKKMNLDFELKMNRPMG
ETRAVNLVSMPARWMPGDGAESMLNLKFFKQFDGYVGGPTAWSMLAELESGRFPTFTYADWQSPKQMIEVALSPVLFQEQ
YNVFSMCIANLLPYSFEDISFTILHFDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDSSGGKNVNQQVSERRA
LKLQNYFESIGLPADRIRVHSYGERRPIADNATPIGKNKNRRVVISLGRTII

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=39.0476190476191, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33109; Mature: 33109

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFVTSALLVSFLIATPVLANKNYVAKPEQSKWTMLENSPLECRLSHNIPNYGSAQFS
CCEEEHHHHHHHHHHHHCCHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCHHHH
SYANKKMNLDFELKMNRPMGETRAVNLVSMPARWMPGDGAESMLNLKFFKQFDGYVGGPT
HHCCCCCCCEEEEEECCCCCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCHH
AWSMLAELESGRFPTFTYADWQSPKQMIEVALSPVLFQEQYNVFSMCIANLLPYSFEDIS
HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
FTILHFDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDSSGGKNVNQQVSERRA
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
LKLQNYFESIGLPADRIRVHSYGERRPIADNATPIGKNKNRRVVISLGRTII
HHHHHHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MKKIFVTSALLVSFLIATPVLANKNYVAKPEQSKWTMLENSPLECRLSHNIPNYGSAQFS
CCEEEHHHHHHHHHHHHCCHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCHHHH
SYANKKMNLDFELKMNRPMGETRAVNLVSMPARWMPGDGAESMLNLKFFKQFDGYVGGPT
HHCCCCCCCEEEEEECCCCCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCHH
AWSMLAELESGRFPTFTYADWQSPKQMIEVALSPVLFQEQYNVFSMCIANLLPYSFEDIS
HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
FTILHFDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDSSGGKNVNQQVSERRA
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
LKLQNYFESIGLPADRIRVHSYGERRPIADNATPIGKNKNRRVVISLGRTII
HHHHHHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA