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The map label for this gene is ymdC [H]

Identifier: 59711472

GI number: 59711472

Start: 950505

End: 952052

Strand: Direct

Name: ymdC [H]

Synonym: VF_0865

Alternate gene names: 59711472

Gene position: 950505-952052 (Clockwise)

Preceding gene: 59711470

Following gene: 59711475

Centisome position: 32.8

GC content: 40.76

Gene sequence:

>1548_bases
ATGTCAGTGCTTAAACGCATTCATGTCACTCTATTTTTTGTCGCTATTCTTTCTGGCTGTGGTTCGCTTCCTAATGAAAT
TGAACACACGAACGAATCGGTATCAGCACCATTAAGCAGTTCGCTTTCTGAGTTAAGTGCTTCTTTCCAAACAGTTCCCT
CAACAGCAGAAACCAGTGCTGTTTTGTTGCAAGATTCGGGATGGGATGCATTAGCGCAACGTTTAGCATTAATTGAGACT
GCAGAGCACAGCATTGATATCCAATATTATATTTGGAACTCAGACGCTTCAGGTCATTACCTTGCCAGTCGTTTATTAGC
GGCGGCAGATCGTGGTGTTAAAGTGCGTGTCATGCTGGATGATATCAATCTCAATGAACGTGAAGATCTACTTGTGGCAT
TAAACGCGCATCCTCACGTTGAGATACGAGTATTTAACCCTATTCCCACTCGCCGTGGCGTTACAAAGTGGGTGAACTTC
TTAGGGGATTTTTCTCGTTTAAATCGTCGTATGCACAATAAATCATTCACCGTTGATGGCGTGTTCTCTGTTGTTGGTGG
ACGTAATATTGGTGATGAGTATTTTGATCTTTCTAACGAGATTAACTTTCGAGACCGTGATGTGTTAGTTCGAGGTTCTG
TCGTTTATGATATACAAACCAGCTTTATCGAGTATTGGGACAGCCGTTGGTCTTACCCTGTGGATTTATTAGCAAAAGAA
GCTTCGCAAGAACCACTCTTACAAAAACAACCAGTATTAGATGAGATTGATGCACCTGTTTATAAAAACTACCCAGCTTT
ACCAGAGGGAAATAAAACAGCGCATCAATACTTAACTAATCTAATGGATAAAATGACTTGGGTTAATGCTAAGTTCGTAT
TTGATCGCCCAGTACCGCTTGATAAAGACAATACCGATGAGCCTAAAGAGACCGCAAAAGCCCTCGGCAAATTGGCCAGT
GAATCCAAGAAAGAGATCTTATTAGAATCGGCTTACCTTATTTTTGATGATAACCAACTTAAAGGGTGGCAAGCGCTTAT
TAATACAGGTGTTGAGATAAAAGCGCTTACCAACTCAATGGCATCGAACGATTTAACCACTAACCACTCAGGTTACGCAG
GTCGCCGTCAAGATATGCTTGAGCACGGCATTCAACTTTATGAATTAAAGCCTGAAACAGAGCTATGTGAAGAGTCGACC
AAAGACGTTTCTAAATGTGCACCAATATTACCTTATGGACTTCACGCCAAGTCCGCAGTTTTTGATGACAAAATCGCAAG
TATCGGCTCTTTTAACTTCAATTTGCGTTCAACGTACTTGAATACAGAATCGATTTTAATTATTGAAAATCAAAAAATCG
CAGAGCAACTCACTCAAGATATTGAACACGCCATGGATGAAGAAAATAGTTGGCACCTAAAACTGCAAGAAGGGGATGTT
CGTTGGTATTCTGGTGATAAAAGTTGGGAAAGTGAACCAGAAACTGGGCGTTGGGAGCGATTTCAATCTGGATTCTTACA
GTTATTACCAATAGAAAAGTATTTGTGA

Upstream 100 bases:

>100_bases
TATCAGAATATATAAGATTACTCTTTGTTTTCTTGCTAAGATTAAAACAGTTCTTATCTATCGCATTGGTTATTCAACAT
TAACAAAGGAAGTTTATTCA

Downstream 100 bases:

>100_bases
TTTAACGTTGAATAGGAACCTTGTGGTAATTTTTCGTTATTACCACAAACCCTAACACTCAGTGTTTATTCATAAATCGA
ATTAGAATGACATTCGTCCA

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSVLKRIHVTLFFVAILSGCGSLPNEIEHTNESVSAPLSSSLSELSASFQTVPSTAETSAVLLQDSGWDALAQRLALIET
AEHSIDIQYYIWNSDASGHYLASRLLAAADRGVKVRVMLDDINLNEREDLLVALNAHPHVEIRVFNPIPTRRGVTKWVNF
LGDFSRLNRRMHNKSFTVDGVFSVVGGRNIGDEYFDLSNEINFRDRDVLVRGSVVYDIQTSFIEYWDSRWSYPVDLLAKE
ASQEPLLQKQPVLDEIDAPVYKNYPALPEGNKTAHQYLTNLMDKMTWVNAKFVFDRPVPLDKDNTDEPKETAKALGKLAS
ESKKEILLESAYLIFDDNQLKGWQALINTGVEIKALTNSMASNDLTTNHSGYAGRRQDMLEHGIQLYELKPETELCEEST
KDVSKCAPILPYGLHAKSAVFDDKIASIGSFNFNLRSTYLNTESILIIENQKIAEQLTQDIEHAMDEENSWHLKLQEGDV
RWYSGDKSWESEPETGRWERFQSGFLQLLPIEKYL

Sequences:

>Translated_515_residues
MSVLKRIHVTLFFVAILSGCGSLPNEIEHTNESVSAPLSSSLSELSASFQTVPSTAETSAVLLQDSGWDALAQRLALIET
AEHSIDIQYYIWNSDASGHYLASRLLAAADRGVKVRVMLDDINLNEREDLLVALNAHPHVEIRVFNPIPTRRGVTKWVNF
LGDFSRLNRRMHNKSFTVDGVFSVVGGRNIGDEYFDLSNEINFRDRDVLVRGSVVYDIQTSFIEYWDSRWSYPVDLLAKE
ASQEPLLQKQPVLDEIDAPVYKNYPALPEGNKTAHQYLTNLMDKMTWVNAKFVFDRPVPLDKDNTDEPKETAKALGKLAS
ESKKEILLESAYLIFDDNQLKGWQALINTGVEIKALTNSMASNDLTTNHSGYAGRRQDMLEHGIQLYELKPETELCEEST
KDVSKCAPILPYGLHAKSAVFDDKIASIGSFNFNLRSTYLNTESILIIENQKIAEQLTQDIEHAMDEENSWHLKLQEGDV
RWYSGDKSWESEPETGRWERFQSGFLQLLPIEKYL
>Mature_514_residues
SVLKRIHVTLFFVAILSGCGSLPNEIEHTNESVSAPLSSSLSELSASFQTVPSTAETSAVLLQDSGWDALAQRLALIETA
EHSIDIQYYIWNSDASGHYLASRLLAAADRGVKVRVMLDDINLNEREDLLVALNAHPHVEIRVFNPIPTRRGVTKWVNFL
GDFSRLNRRMHNKSFTVDGVFSVVGGRNIGDEYFDLSNEINFRDRDVLVRGSVVYDIQTSFIEYWDSRWSYPVDLLAKEA
SQEPLLQKQPVLDEIDAPVYKNYPALPEGNKTAHQYLTNLMDKMTWVNAKFVFDRPVPLDKDNTDEPKETAKALGKLASE
SKKEILLESAYLIFDDNQLKGWQALINTGVEIKALTNSMASNDLTTNHSGYAGRRQDMLEHGIQLYELKPETELCEESTK
DVSKCAPILPYGLHAKSAVFDDKIASIGSFNFNLRSTYLNTESILIIENQKIAEQLTQDIEHAMDEENSWHLKLQEGDVR
WYSGDKSWESEPETGRWERFQSGFLQLLPIEKYL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=463, Percent_Identity=36.7170626349892, Blast_Score=252, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58330; Mature: 58199

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLKRIHVTLFFVAILSGCGSLPNEIEHTNESVSAPLSSSLSELSASFQTVPSTAETSA
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCE
VLLQDSGWDALAQRLALIETAEHSIDIQYYIWNSDASGHYLASRLLAAADRGVKVRVMLD
EEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEE
DINLNEREDLLVALNAHPHVEIRVFNPIPTRRGVTKWVNFLGDFSRLNRRMHNKSFTVDG
CCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
VFSVVGGRNIGDEYFDLSNEINFRDRDVLVRGSVVYDIQTSFIEYWDSRWSYPVDLLAKE
HHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHCCCCCCHHHHHHH
ASQEPLLQKQPVLDEIDAPVYKNYPALPEGNKTAHQYLTNLMDKMTWVNAKFVFDRPVPL
CCCCCCHHCCCCHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC
DKDNTDEPKETAKALGKLASESKKEILLESAYLIFDDNQLKGWQALINTGVEIKALTNSM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHCCCEEEEHHHHH
ASNDLTTNHSGYAGRRQDMLEHGIQLYELKPETELCEESTKDVSKCAPILPYGLHAKSAV
HCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
FDDKIASIGSFNFNLRSTYLNTESILIIENQKIAEQLTQDIEHAMDEENSWHLKLQEGDV
HHHHHHHHCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCE
RWYSGDKSWESEPETGRWERFQSGFLQLLPIEKYL
EEECCCCCCCCCCCCCHHHHHHCCCEEEECHHHCC
>Mature Secondary Structure 
SVLKRIHVTLFFVAILSGCGSLPNEIEHTNESVSAPLSSSLSELSASFQTVPSTAETSA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCE
VLLQDSGWDALAQRLALIETAEHSIDIQYYIWNSDASGHYLASRLLAAADRGVKVRVMLD
EEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEE
DINLNEREDLLVALNAHPHVEIRVFNPIPTRRGVTKWVNFLGDFSRLNRRMHNKSFTVDG
CCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
VFSVVGGRNIGDEYFDLSNEINFRDRDVLVRGSVVYDIQTSFIEYWDSRWSYPVDLLAKE
HHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHCCCCCCHHHHHHH
ASQEPLLQKQPVLDEIDAPVYKNYPALPEGNKTAHQYLTNLMDKMTWVNAKFVFDRPVPL
CCCCCCHHCCCCHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC
DKDNTDEPKETAKALGKLASESKKEILLESAYLIFDDNQLKGWQALINTGVEIKALTNSM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHCCCEEEEHHHHH
ASNDLTTNHSGYAGRRQDMLEHGIQLYELKPETELCEESTKDVSKCAPILPYGLHAKSAV
HCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
FDDKIASIGSFNFNLRSTYLNTESILIIENQKIAEQLTQDIEHAMDEENSWHLKLQEGDV
HHHHHHHHCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCE
RWYSGDKSWESEPETGRWERFQSGFLQLLPIEKYL
EEECCCCCCCCCCCCCHHHHHHCCCEEEECHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]