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The map label for this gene is syd

Identifier: 59711206

GI number: 59711206

Start: 659314

End: 659865

Strand: Direct

Name: syd

Synonym: VF_0599

Alternate gene names: 59711206

Gene position: 659314-659865 (Clockwise)

Preceding gene: 228873812

Following gene: 59711207

Centisome position: 22.75

GC content: 39.31

Gene sequence:

>552_bases
ATGCCACTTTCGGTAGAGCAAGCGCTTGCTAACTTTAGCCAACGTTATGTAGAAGCATGGAAAGCACAACATGATTGCTT
GCCAATTAATGAAGAGTTAGTGGGATTAGCTTCTCCTTGTATTGAAGAAACGCGAGATTTAGAAATATCTTGGCAACCTA
TTGTTAGAGATGAAGCGATTCGTTTGCATAATATTGAGCAAGGAATTGAACTGGATCTTCATGACGACTTCCATGCATTT
TATGGCACTCAATATAGTGCGGATATGACAGCCAAGTTTGAAGATATGAATATCGAACTTCTTCAAGTGTGGAGTGATGA
GGATCTGGAGCGTTTGCAAGGCAATATGCTAGGTCATTTAGTCATGCAGCGTCGTCTGAAACTAGTACCGACTTTATTTG
TTGCTGTTACAGATGATGAAATGGAAGTCGTTTCTATTTGTAATCAATCTGGTGAAGTGATTTTAGATCGCGTTGGTACT
AAAAATAGAACAGTATTAGCGGCGAATATGGCTGAGTTTTTAAATAAACTAGAGCCGGTTATTGCTGCATAG

Upstream 100 bases:

>100_bases
AAAATACCAAAAGTAGATTAGAATAAGGCGTACTAAGTAGACAGCCTTTCGTTTAATATTGGATAGTTTACTTGAAATTT
TATCTTATGAGGAGAATCGA

Downstream 100 bases:

>100_bases
TTAATTGGTAAATGATTAAATCAATTCCGGTGTAATTACATCGGAATTTTTATTTTTAAAGTGGTTAGGAAAAGAGCGTT
AATGTTTGTTACTGAGTTAG

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MPLSVEQALANFSQRYVEAWKAQHDCLPINEELVGLASPCIEETRDLEISWQPIVRDEAIRLHNIEQGIELDLHDDFHAF
YGTQYSADMTAKFEDMNIELLQVWSDEDLERLQGNMLGHLVMQRRLKLVPTLFVAVTDDEMEVVSICNQSGEVILDRVGT
KNRTVLAANMAEFLNKLEPVIAA

Sequences:

>Translated_183_residues
MPLSVEQALANFSQRYVEAWKAQHDCLPINEELVGLASPCIEETRDLEISWQPIVRDEAIRLHNIEQGIELDLHDDFHAF
YGTQYSADMTAKFEDMNIELLQVWSDEDLERLQGNMLGHLVMQRRLKLVPTLFVAVTDDEMEVVSICNQSGEVILDRVGT
KNRTVLAANMAEFLNKLEPVIAA
>Mature_182_residues
PLSVEQALANFSQRYVEAWKAQHDCLPINEELVGLASPCIEETRDLEISWQPIVRDEAIRLHNIEQGIELDLHDDFHAFY
GTQYSADMTAKFEDMNIELLQVWSDEDLERLQGNMLGHLVMQRRLKLVPTLFVAVTDDEMEVVSICNQSGEVILDRVGTK
NRTVLAANMAEFLNKLEPVIAA

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=175, Percent_Identity=45.7142857142857, Blast_Score=182, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_VIBF1 (Q5E7A2)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_203982.1
- STRING:   Q5E7A2
- GeneID:   3277337
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_0599
- NMPDR:   fig|312309.3.peg.695
- eggNOG:   NOG05748
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- PhylomeDB:   Q5E7A2
- ProtClustDB:   PRK04968
- BioCyc:   VFIS312309:VF0599-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20841; Mature: 20710

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSVEQALANFSQRYVEAWKAQHDCLPINEELVGLASPCIEETRDLEISWQPIVRDEAI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHH
RLHNIEQGIELDLHDDFHAFYGTQYSADMTAKFEDMNIELLQVWSDEDLERLQGNMLGHL
HHHCCCCCCEEECCCCHHHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHH
VMQRRLKLVPTLFVAVTDDEMEVVSICNQSGEVILDRVGTKNRTVLAANMAEFLNKLEPV
HHHHHHHHHCEEEEEEECCCHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHHH
IAA
HCC
>Mature Secondary Structure 
PLSVEQALANFSQRYVEAWKAQHDCLPINEELVGLASPCIEETRDLEISWQPIVRDEAI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHH
RLHNIEQGIELDLHDDFHAFYGTQYSADMTAKFEDMNIELLQVWSDEDLERLQGNMLGHL
HHHCCCCCCEEECCCCHHHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHH
VMQRRLKLVPTLFVAVTDDEMEVVSICNQSGEVILDRVGTKNRTVLAANMAEFLNKLEPV
HHHHHHHHHCEEEEEEECCCHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHHH
IAA
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA