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The map label for this gene is yqaA [H]

Identifier: 59711148

GI number: 59711148

Start: 588174

End: 588668

Strand: Direct

Name: yqaA [H]

Synonym: VF_0541

Alternate gene names: 59711148

Gene position: 588174-588668 (Clockwise)

Preceding gene: 59711147

Following gene: 59711149

Centisome position: 20.3

GC content: 36.77

Gene sequence:

>495_bases
ATGCGCCCTTTTTTATTTTATGCTTACTGTTATCTTAGTATTTATAATGGAATAAATTCAATCATGTTTGATTGGTTTAA
TGCAGATTCTGCATTATGGGTATTATTTAGCTCTGGCTTTTTAAGTGCGACTTTATTACCAGGCGCTTCTGAAGCGAGTC
TAATCGCAACATTGCAATTAAATAGCTTTTCTACATGGCTTGTTGTTTTTGTTGCAACGCTAGGCAATACATTAGGTGGA
ATAACAAACTATTGGCTTGGTTTATTACTTCCTGATAAAACTTCTTCGCAGAAACACGGTCATAAAGCCATTCAATGGAT
TAAAAAATATGGCTATTGGACATTATTATTTAGTTGGTTACCAATCATTGGCGATCCCCTTTGTTTAGCTGCCGGGTGGT
TAAGGATGCGATTTTGGCCATGTATTTTTTTAATTGGGGTTGGTAAAGCGGCGCGATATGCCTTGCTATCGCTTGCAGTA
AACGGGATTTTATAG

Upstream 100 bases:

>100_bases
GCCAAATGTAGCGGGTGTGCTTGGTTCTGCTGTTGCTGCAGGTATACTTCTTGCGCTAGTTGGTTAATTTTGAACAAAAC
CTAACAATAAAAGGGTGCTG

Downstream 100 bases:

>100_bases
GACATAAGAATGAAAAAAATATTAAGCCTTTCAATTGTTTTGGCGCTTGCAGGTTGCAGTAAATCTGAATTTGAAGCTCC
GAAAGCGACTGATTTACCAA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MRPFLFYAYCYLSIYNGINSIMFDWFNADSALWVLFSSGFLSATLLPGASEASLIATLQLNSFSTWLVVFVATLGNTLGG
ITNYWLGLLLPDKTSSQKHGHKAIQWIKKYGYWTLLFSWLPIIGDPLCLAAGWLRMRFWPCIFLIGVGKAARYALLSLAV
NGIL

Sequences:

>Translated_164_residues
MRPFLFYAYCYLSIYNGINSIMFDWFNADSALWVLFSSGFLSATLLPGASEASLIATLQLNSFSTWLVVFVATLGNTLGG
ITNYWLGLLLPDKTSSQKHGHKAIQWIKKYGYWTLLFSWLPIIGDPLCLAAGWLRMRFWPCIFLIGVGKAARYALLSLAV
NGIL
>Mature_164_residues
MRPFLFYAYCYLSIYNGINSIMFDWFNADSALWVLFSSGFLSATLLPGASEASLIATLQLNSFSTWLVVFVATLGNTLGG
ITNYWLGLLLPDKTSSQKHGHKAIQWIKKYGYWTLLFSWLPIIGDPLCLAAGWLRMRFWPCIFLIGVGKAARYALLSLAV
NGIL

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=135, Percent_Identity=48.1481481481481, Blast_Score=117, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 18359; Mature: 18359

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPFLFYAYCYLSIYNGINSIMFDWFNADSALWVLFSSGFLSATLLPGASEASLIATLQL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCEEEEEEEE
NSFSTWLVVFVATLGNTLGGITNYWLGLLLPDKTSSQKHGHKAIQWIKKYGYWTLLFSWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
PIIGDPLCLAAGWLRMRFWPCIFLIGVGKAARYALLSLAVNGIL
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPFLFYAYCYLSIYNGINSIMFDWFNADSALWVLFSSGFLSATLLPGASEASLIATLQL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCEEEEEEEE
NSFSTWLVVFVATLGNTLGGITNYWLGLLLPDKTSSQKHGHKAIQWIKKYGYWTLLFSWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
PIIGDPLCLAAGWLRMRFWPCIFLIGVGKAARYALLSLAVNGIL
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]