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The map label for this gene is ompA [H]

Identifier: 59711130

GI number: 59711130

Start: 558354

End: 559013

Strand: Direct

Name: ompA [H]

Synonym: VF_0523

Alternate gene names: 59711130

Gene position: 558354-559013 (Clockwise)

Preceding gene: 59711129

Following gene: 59711135

Centisome position: 19.27

GC content: 34.09

Gene sequence:

>660_bases
ATGAAAAAAATATGTGTGTTATTGGCTTTATTTTCTGCCAATGTTTTATCTGCTGAGAAAAATAATAACCAAGAATTTAA
TCAGTTACTTGATTATTATTGTGGAACTGAGAGTGTTGAGTTTCAGGAACAAGTAACCATTGGTGAAGGTAAGCAAATCT
TGTTTCATCAAGGACCATTTATGCAAGTAAATACTGAATTATCGCCTGATGTTATTAAGCGAACATTCAGTAATGCAATG
CAACAAGCAAATCTGAGTAGCCAGTGCAGTGAGTATTTATTAAGTTATGCTGAGGTCGTTGAGGATAATGTAGAACAAAA
ATTATTTGCTCGAGTACTATTTAATTTTGATCAATATTCTTTAACGGAACGTTCAAAGTATATTCTTCAAAGCGTAACGG
AAAAACTAGAGACACAAAAAGATACGGTGTTACTTAATGGTCACACTGATAATAAAGGCAGAGAGAACTACAATATTAAT
TTAGGATTAGCTCGTTCAAATAGCGTAAAGGCATTTTTATTGGCTCAAGGTGCTAGCAAAGAGCAGTTAGAATCTTATTC
ATTTGGAGAGCAACAGCCGATTGATGACAATACCACATTGGAAGGTCAGCACCATAATCGCCGAGTTGATATTGAGAAAA
AAGCTAACGAAACTAATTGA

Upstream 100 bases:

>100_bases
CGCATTTAGTGCAAATAATAAAGATGAAATTTTAAATTTAATTATGTCATTGGTATCAGAAGAAGTCGGGCATTTAGCTC
AATAACGTCGAGAGTAAATT

Downstream 100 bases:

>100_bases
TAGTTAAAGATAGGCGGTGTTACTAACGAAAGGTTGGAATACCGCCTTTGTTTGCTAAATAGGTAGCTTTATTTTTAGTA
GTGCACCTAAACGTTTATTC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKKICVLLALFSANVLSAEKNNNQEFNQLLDYYCGTESVEFQEQVTIGEGKQILFHQGPFMQVNTELSPDVIKRTFSNAM
QQANLSSQCSEYLLSYAEVVEDNVEQKLFARVLFNFDQYSLTERSKYILQSVTEKLETQKDTVLLNGHTDNKGRENYNIN
LGLARSNSVKAFLLAQGASKEQLESYSFGEQQPIDDNTTLEGQHHNRRVDIEKKANETN

Sequences:

>Translated_219_residues
MKKICVLLALFSANVLSAEKNNNQEFNQLLDYYCGTESVEFQEQVTIGEGKQILFHQGPFMQVNTELSPDVIKRTFSNAM
QQANLSSQCSEYLLSYAEVVEDNVEQKLFARVLFNFDQYSLTERSKYILQSVTEKLETQKDTVLLNGHTDNKGRENYNIN
LGLARSNSVKAFLLAQGASKEQLESYSFGEQQPIDDNTTLEGQHHNRRVDIEKKANETN
>Mature_219_residues
MKKICVLLALFSANVLSAEKNNNQEFNQLLDYYCGTESVEFQEQVTIGEGKQILFHQGPFMQVNTELSPDVIKRTFSNAM
QQANLSSQCSEYLLSYAEVVEDNVEQKLFARVLFNFDQYSLTERSKYILQSVTEKLETQKDTVLLNGHTDNKGRENYNIN
LGLARSNSVKAFLLAQGASKEQLESYSFGEQQPIDDNTTLEGQHHNRRVDIEKKANETN

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24963; Mature: 24963

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKICVLLALFSANVLSAEKNNNQEFNQLLDYYCGTESVEFQEQVTIGEGKQILFHQGPF
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHEECCCCCEEEEECCCC
MQVNTELSPDVIKRTFSNAMQQANLSSQCSEYLLSYAEVVEDNVEQKLFARVLFNFDQYS
EEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LTERSKYILQSVTEKLETQKDTVLLNGHTDNKGRENYNINLGLARSNSVKAFLLAQGASK
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCH
EQLESYSFGEQQPIDDNTTLEGQHHNRRVDIEKKANETN
HHHHHCCCCCCCCCCCCCEECCCCCCCEECHHHCCCCCC
>Mature Secondary Structure
MKKICVLLALFSANVLSAEKNNNQEFNQLLDYYCGTESVEFQEQVTIGEGKQILFHQGPF
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHEECCCCCEEEEECCCC
MQVNTELSPDVIKRTFSNAMQQANLSSQCSEYLLSYAEVVEDNVEQKLFARVLFNFDQYS
EEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LTERSKYILQSVTEKLETQKDTVLLNGHTDNKGRENYNINLGLARSNSVKAFLLAQGASK
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCH
EQLESYSFGEQQPIDDNTTLEGQHHNRRVDIEKKANETN
HHHHHCCCCCCCCCCCCCEECCCCCCCEECHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]