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The map label for this gene is ytfJ [H]

Identifier: 59710936

GI number: 59710936

Start: 339080

End: 339631

Strand: Reverse

Name: ytfJ [H]

Synonym: VF_0329

Alternate gene names: 59710936

Gene position: 339631-339080 (Counterclockwise)

Preceding gene: 59710938

Following gene: 59710935

Centisome position: 11.72

GC content: 36.05

Gene sequence:

>552_bases
ATGAAAAAAGTAAAACTACTTACACTTGCGGCTTGTCTGCTCCCTTCTCTTTCATTTGCTCACAACCTAACTCTTAATAA
AGAAGTTCCATCAGTTTCAATTGAACAGTATGGTGAAATCTTTTTTAAAAACTCTGCTGCAACCTATCAAAACTGGAATA
CTGAACAACTTAAAGGAAAAGTTCGAGTATTGCAGGCAATAGCAGGTCGAAGCAGTGCGAAAGCAATGAACGCCGATCTT
ATGAGTGCAATTACATTAGAAAAGTTCCCAGAAACAGAATATCAAACAACAACTATCATCAATCAAGATGATTCTATCTG
GGGAACTGGTGGATTTGTGAAGTCTTCTGCTGAAGAAAGCAAAGAAGAGTTTTCATGGTCTTCAATGGTATTAGATGAGC
ACGGTAAGGTAGCCAAAGCTTGGGATTTACAACCTGAAAGTTCAGCAATTATCGTTCAAGATAAAGAAGGGAAAATTCTT
TTTGTTAAAGAAGGAAAGTTATCAAACGATGAAATTAAGCAAGTTATTGCGCTAATTCACACTCAATTATAA

Upstream 100 bases:

>100_bases
TTTTCAACAAGGAGAAAATCAAAACCACAAAGACTGGTCGAATCGCTTTTTTCTTATCGCTACACTAAACTACGAAGGTT
AATCATCAAGGATAATAAAA

Downstream 100 bases:

>100_bases
ATAATGCCTTGCTTATAAAATGTTATATTATTACATTTACTACTCATTCAATTAGGGTAGTACAATGCAATCGTATTTCT
TTACTAAACAACGCTGGTTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGKVRVLQAIAGRSSAKAMNADL
MSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEESKEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKIL
FVKEGKLSNDEIKQVIALIHTQL

Sequences:

>Translated_183_residues
MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGKVRVLQAIAGRSSAKAMNADL
MSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEESKEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKIL
FVKEGKLSNDEIKQVIALIHTQL
>Mature_183_residues
MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGKVRVLQAIAGRSSAKAMNADL
MSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEESKEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKIL
FVKEGKLSNDEIKQVIALIHTQL

Specific function: Unknown

COG id: COG3054

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0045 [H]

Homologues:

Organism=Escherichia coli, GI1790662, Length=179, Percent_Identity=44.6927374301676, Blast_Score=166, Evalue=7e-43,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006513 [H]

Pfam domain/function: PF09695 YtfJ_HI0045 [H]

EC number: NA

Molecular weight: Translated: 20324; Mature: 20324

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK
CCCHHHHHHHHHHHCCHHHHHCCEECCCCCCCCHHHHCCEEECCCCCCCCCCCHHHHHHH
VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCHHHH
KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH
HHHHHHHHHEECCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
TQL
HCC
>Mature Secondary Structure
MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK
CCCHHHHHHHHHHHCCHHHHHCCEECCCCCCCCHHHHCCEEECCCCCCCCCCCHHHHHHH
VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCHHHH
KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH
HHHHHHHHHEECCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
TQL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7764507; 9298646; 10493123 [H]