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The map label for this gene is 59710832

Identifier: 59710832

GI number: 59710832

Start: 244215

End: 245228

Strand: Reverse

Name: 59710832

Synonym: VF_0225

Alternate gene names: NA

Gene position: 245228-244215 (Counterclockwise)

Preceding gene: 59710871

Following gene: 59710831

Centisome position: 8.46

GC content: 40.43

Gene sequence:

>1014_bases
ATGCGCGCTATATCTCAATACATCGCTATTTTTGTCATTACGCTGACATTATCGGGCTGTTTTTTCCAAAATTCAGACGA
CCAACGCTGGGAATTAGCTCCCCAGGGAACAACAAGTTTTGCGTTAAGTCGTGATGCTCGTTTTGCTCTTTTCTTTGTTA
AGAATGACTCTATTCCTGAAAAAAATGAATCACAAGTAAAATCTGGTCTTCATTTTTGGGATCTTGTAGAAAATAAAGAA
CTGACTTTTTTCGGTGACCAAGATCAAGATAAATCAACGGTGTCCTATATCAGAATCTCTGATAACTCTCGATTTGCAAT
AACCGCAACTCAAACTAACTTTGCTGTTTGGGATTTGGGAATGGGAATATCTGAAGGGTTATGGTCTATCTCTGACGGTA
TTATTCGAGATGTAGCCATTGCAAGTAATGGACAACAAGTTCTACTTGGGCTTTCAAATGGTAAAGCCATTTATATCAAT
CTGGCTACCGGCCGCCGCTTAGAATTTTTAGCTCACAGAGAAAAAGTTAATTCTGTCGCCCTTTCTGCAAATGGTAAATT
TGCCCTATCTGGTGGTAATGATTACTTTGCTTATTTGTGGGATACCGAAACAGGGCAAATACTTCGTACCTTTGAACATG
AAAAACGAGTAAGTCGAACGGCACTTCAACGCGATGGTAAATATGCTTTTACTGCCGATGGTGGTAATGAAGGTTTTATT
TGGGATTTAAAAACCGGTGAAAAGATAACAGAACTTAGTACGTTAGCTCGCCAACAGGTATATTCTACCGCTCGCTTTAG
TGATGATGGCCAACTTCTGGTTACAGGTTCTCCCTCTGGAACCGTAAATGTATGGAATACCACATCAGGTAAAAAGCTCG
AACAATGGCGTTCAGAACCATTAAAAGATGCACGCCCACCAACAGCAGTAGTGTATGATGTCGCCATTGATAAACAACAA
CGAGTGGTTTCAGCAACATCAGCAGGAATCGCCCAAGCGTGGTTAATAGAATAA

Upstream 100 bases:

>100_bases
GTGATCGAATACTTATTTAGATTGGTATATAGATGCGAAATACTGTTCATCACAATATACTAGTACTTATAGACACATTA
CAAACGAGTAGTTCAATTTG

Downstream 100 bases:

>100_bases
TGACAACAACAATTGAACAATTAGAACAAAAGATCAGTGATTTAGAGTGTCAAATGGCGTTTCAAGAGCAAACCATTGAT
GAACTAAACGACGCCCTATC

Product: vegetatible incompatibility protein HET-E-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MRAISQYIAIFVITLTLSGCFFQNSDDQRWELAPQGTTSFALSRDARFALFFVKNDSIPEKNESQVKSGLHFWDLVENKE
LTFFGDQDQDKSTVSYIRISDNSRFAITATQTNFAVWDLGMGISEGLWSISDGIIRDVAIASNGQQVLLGLSNGKAIYIN
LATGRRLEFLAHREKVNSVALSANGKFALSGGNDYFAYLWDTETGQILRTFEHEKRVSRTALQRDGKYAFTADGGNEGFI
WDLKTGEKITELSTLARQQVYSTARFSDDGQLLVTGSPSGTVNVWNTTSGKKLEQWRSEPLKDARPPTAVVYDVAIDKQQ
RVVSATSAGIAQAWLIE

Sequences:

>Translated_337_residues
MRAISQYIAIFVITLTLSGCFFQNSDDQRWELAPQGTTSFALSRDARFALFFVKNDSIPEKNESQVKSGLHFWDLVENKE
LTFFGDQDQDKSTVSYIRISDNSRFAITATQTNFAVWDLGMGISEGLWSISDGIIRDVAIASNGQQVLLGLSNGKAIYIN
LATGRRLEFLAHREKVNSVALSANGKFALSGGNDYFAYLWDTETGQILRTFEHEKRVSRTALQRDGKYAFTADGGNEGFI
WDLKTGEKITELSTLARQQVYSTARFSDDGQLLVTGSPSGTVNVWNTTSGKKLEQWRSEPLKDARPPTAVVYDVAIDKQQ
RVVSATSAGIAQAWLIE
>Mature_337_residues
MRAISQYIAIFVITLTLSGCFFQNSDDQRWELAPQGTTSFALSRDARFALFFVKNDSIPEKNESQVKSGLHFWDLVENKE
LTFFGDQDQDKSTVSYIRISDNSRFAITATQTNFAVWDLGMGISEGLWSISDGIIRDVAIASNGQQVLLGLSNGKAIYIN
LATGRRLEFLAHREKVNSVALSANGKFALSGGNDYFAYLWDTETGQILRTFEHEKRVSRTALQRDGKYAFTADGGNEGFI
WDLKTGEKITELSTLARQQVYSTARFSDDGQLLVTGSPSGTVNVWNTTSGKKLEQWRSEPLKDARPPTAVVYDVAIDKQQ
RVVSATSAGIAQAWLIE

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319675, Length=142, Percent_Identity=28.8732394366197, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 37443; Mature: 37443

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAISQYIAIFVITLTLSGCFFQNSDDQRWELAPQGTTSFALSRDARFALFFVKNDSIPE
CCHHHHHHHHHHHEEHHCCEEEECCCCCEEEECCCCCCEEEEECCCEEEEEEEECCCCCC
KNESQVKSGLHFWDLVENKELTFFGDQDQDKSTVSYIRISDNSRFAITATQTNFAVWDLG
CCHHHHHCCCEEEEEECCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEC
MGISEGLWSISDGIIRDVAIASNGQQVLLGLSNGKAIYINLATGRRLEFLAHREKVNSVA
CCHHHCHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEHHHHHHHHHCEEE
LSANGKFALSGGNDYFAYLWDTETGQILRTFEHEKRVSRTALQRDGKYAFTADGGNEGFI
EECCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
WDLKTGEKITELSTLARQQVYSTARFSDDGQLLVTGSPSGTVNVWNTTSGKKLEQWRSEP
EEECCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCC
LKDARPPTAVVYDVAIDKQQRVVSATSAGIAQAWLIE
CCCCCCCCEEEEEEEECCCHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MRAISQYIAIFVITLTLSGCFFQNSDDQRWELAPQGTTSFALSRDARFALFFVKNDSIPE
CCHHHHHHHHHHHEEHHCCEEEECCCCCEEEECCCCCCEEEEECCCEEEEEEEECCCCCC
KNESQVKSGLHFWDLVENKELTFFGDQDQDKSTVSYIRISDNSRFAITATQTNFAVWDLG
CCHHHHHCCCEEEEEECCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEC
MGISEGLWSISDGIIRDVAIASNGQQVLLGLSNGKAIYINLATGRRLEFLAHREKVNSVA
CCHHHCHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEHHHHHHHHHCEEE
LSANGKFALSGGNDYFAYLWDTETGQILRTFEHEKRVSRTALQRDGKYAFTADGGNEGFI
EECCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
WDLKTGEKITELSTLARQQVYSTARFSDDGQLLVTGSPSGTVNVWNTTSGKKLEQWRSEP
EEECCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCC
LKDARPPTAVVYDVAIDKQQRVVSATSAGIAQAWLIE
CCCCCCCCEEEEEEEECCCHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]