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The map label for this gene is yicC [C]

Identifier: 59710717

GI number: 59710717

Start: 128097

End: 128960

Strand: Reverse

Name: yicC [C]

Synonym: VF_0110

Alternate gene names: 59710717

Gene position: 128960-128097 (Counterclockwise)

Preceding gene: 59710720

Following gene: 59710713

Centisome position: 4.45

GC content: 41.9

Gene sequence:

>864_bases
ATGATCTACAGTATGACGGCTTATGCACGCCGCGAAGTAAAAGCAGATTGGGGTAACGCTGTGTGGGAAATCCGCTCAGT
AAACCAACGTTATTTAGAAACTTATTTCCGTATGCCAGAACAGTTCCGTGGCTTAGAACCTGTTCTTCGTGAGCGTTTCC
GTAAGCGTCTTGCTCGCGGTAAAGTAGAATGTCACCTACGCTTTGAAGCAAACAATGCAGCAAACAGCGAATTAAAAATT
AATGAAGATTTAGCTCGCCAAGTGATTAAAGCAGCACAATGGGTAAAAACTGAATCAGGCGAAGGCAGCATTAACCCTTT
CCAAATTCTGCAATGGCAAGGCGTAATGGAAGCTCCTGAGCAGGATTTCGATGCGATTAATAAAGAGCTTCTTGAGCACT
TTGAGCTAGCAGTAAATGACTTCATTGAAGCTCGTGCAAGTGAAGGTGCAAACATGCAAACACTTATCGTACAACGCTTA
GATGCTATTACTGAAGAAGCTGCAAAAGTTCGTGCTCGTATGCCAGAGATCCTAGAATGGCAACGTAACCGTCTTCTGAC
TAAATTTGAAGATGCGAAAATTGAACTGGATTCTTCTCGTGTTGAACAAGAGTTGATCCTTTTAGCTCAAAAATCGGATG
TAGCTGAAGAGATCGATCGTTTAGATTCTCACGTTAAAGAAGCAAACAGTATTATGAAAAAAGGCGGCGCATGTGGTCGT
AAACTGGATTTCATGATGCAAGAGTTTAACCGTGAAGCCAACACGCTAGCATCTAAATCAATCAGCACAGATATCACTGC
ATCTGGTGTTGAGCTGAAAGTACTTATCGAACAAATGCGTGAGCAAATTCAGAATATTGAATAA

Upstream 100 bases:

>100_bases
TAGCACCTGTTTCTCTAGTTACTCACTATTGCGCTTATCTGTTATAGTATCGCGATATTTTATTCATCATCCTTCCTATT
GATGATTTGAGGACGCTTAC

Downstream 100 bases:

>100_bases
TTCGATTCTACTAAATATAGATTAATAAAAAGCCCTGAACTTATCAGGGCTTTTTTATCGCTATCAATAACGATACGCTC
TTTAACTTACCTTTTGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MIYSMTAYARREVKADWGNAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARGKVECHLRFEANNAANSELKI
NEDLARQVIKAAQWVKTESGEGSINPFQILQWQGVMEAPEQDFDAINKELLEHFELAVNDFIEARASEGANMQTLIVQRL
DAITEEAAKVRARMPEILEWQRNRLLTKFEDAKIELDSSRVEQELILLAQKSDVAEEIDRLDSHVKEANSIMKKGGACGR
KLDFMMQEFNREANTLASKSISTDITASGVELKVLIEQMREQIQNIE

Sequences:

>Translated_287_residues
MIYSMTAYARREVKADWGNAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARGKVECHLRFEANNAANSELKI
NEDLARQVIKAAQWVKTESGEGSINPFQILQWQGVMEAPEQDFDAINKELLEHFELAVNDFIEARASEGANMQTLIVQRL
DAITEEAAKVRARMPEILEWQRNRLLTKFEDAKIELDSSRVEQELILLAQKSDVAEEIDRLDSHVKEANSIMKKGGACGR
KLDFMMQEFNREANTLASKSISTDITASGVELKVLIEQMREQIQNIE
>Mature_287_residues
MIYSMTAYARREVKADWGNAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARGKVECHLRFEANNAANSELKI
NEDLARQVIKAAQWVKTESGEGSINPFQILQWQGVMEAPEQDFDAINKELLEHFELAVNDFIEARASEGANMQTLIVQRL
DAITEEAAKVRARMPEILEWQRNRLLTKFEDAKIELDSSRVEQELILLAQKSDVAEEIDRLDSHVKEANSIMKKGGACGR
KLDFMMQEFNREANTLASKSISTDITASGVELKVLIEQMREQIQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=287, Percent_Identity=64.4599303135889, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33181; Mature: 33181

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSMTAYARREVKADWGNAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARG
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHCC
KVECHLRFEANNAANSELKINEDLARQVIKAAQWVKTESGEGSINPFQILQWQGVMEAPE
CEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCC
QDFDAINKELLEHFELAVNDFIEARASEGANMQTLIVQRLDAITEEAAKVRARMPEILEW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
QRNRLLTKFEDAKIELDSSRVEQELILLAQKSDVAEEIDRLDSHVKEANSIMKKGGACGR
HHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KLDFMMQEFNREANTLASKSISTDITASGVELKVLIEQMREQIQNIE
HHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIYSMTAYARREVKADWGNAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARG
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHCC
KVECHLRFEANNAANSELKINEDLARQVIKAAQWVKTESGEGSINPFQILQWQGVMEAPE
CEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCC
QDFDAINKELLEHFELAVNDFIEARASEGANMQTLIVQRLDAITEEAAKVRARMPEILEW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
QRNRLLTKFEDAKIELDSSRVEQELILLAQKSDVAEEIDRLDSHVKEANSIMKKGGACGR
HHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KLDFMMQEFNREANTLASKSISTDITASGVELKVLIEQMREQIQNIE
HHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]