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The map label for this gene is rpoZ [H]

Identifier: 59710712

GI number: 59710712

Start: 124616

End: 124888

Strand: Reverse

Name: rpoZ [H]

Synonym: VF_0105

Alternate gene names: 59710712

Gene position: 124888-124616 (Counterclockwise)

Preceding gene: 59710713

Following gene: 59710711

Centisome position: 4.31

GC content: 44.69

Gene sequence:

>273_bases
ATGGCACGTGTAACCGTTCAAGACGCAGTTGAGAAAATCGGCAACCGTTTCGATCTAGTACTTATTTCTTCTCGTCGCGC
ACGTCAAATGCAAACTGGTGGTAAAGATGCGCTAGTGCCTGAAGAGAACGATAAAACAACTGTTATCGCTCTTCGTGAAA
TTGAAGAAGGCCTGATCACTAAAGAATTACTAGATGCTCGTGAGCGCCAAGAGCAACAAGAGCAAGACGCAGCTGAATTA
GCAGCAGTAAGCTCAATCACACACAATCGTTAA

Upstream 100 bases:

>100_bases
TATTTCTACGAGTATCTTGTAACCCTAGCTAGAAACTTATACGGGTTACTTGTATACTTTCTCATCATATAACTATTTTT
GTTAATAAATTGGAGTCCTC

Downstream 100 bases:

>100_bases
TCTTTATAATCTCTTGTAGATTGTAAACAGCAAACCTGACGGGGCGAAATTTGGATTTATTCGATAGCCTGAAAGATGTT
GCCAAAGATTACCTGCCAGA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLITKELLDARERQEQQEQDAAEL
AAVSSITHNR

Sequences:

>Translated_90_residues
MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLITKELLDARERQEQQEQDAAEL
AAVSSITHNR
>Mature_89_residues
ARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLITKELLDARERQEQQEQDAAELA
AVSSITHNR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=90, Percent_Identity=81.1111111111111, Blast_Score=118, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 10103; Mature: 9971

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLIT
CCCCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHH
KELLDARERQEQQEQDAAELAAVSSITHNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLIT
CCCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHH
KELLDARERQEQQEQDAAELAAVSSITHNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA