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The map label for this gene is asnC [H]

Identifier: 59710688

GI number: 59710688

Start: 95145

End: 95606

Strand: Reverse

Name: asnC [H]

Synonym: VF_0081

Alternate gene names: 59710688

Gene position: 95606-95145 (Counterclockwise)

Preceding gene: 59710690

Following gene: 59710682

Centisome position: 3.3

GC content: 42.86

Gene sequence:

>462_bases
ATGAACCAAACCAGCAAAATCGATGATCTCGACCGAGATATTTTACAAGCGTTAATGAATGATGCTCGAACGCCTTACGC
TGAACTCGCAAAACGTTTTGATGTAAGCCCTGCAACCATTCATGTTCGTATTGAAAAAATGAAAGCGGCTAACATCATTG
AAGGTACTGAGGTGGTCGTTAACCCAAAAACCTTGGGCTACGATGTGTGCTGCTTTATTGGTATTAATCTCTATGCGGCG
CGTGACTATCATTCAGCCTTAGCGAAACTCGATGCCTTGGAAGAAGTGGTTGAAGCCTATTACACCACGGGTGCTTACAA
TATCTTCGTCAAGTTAATGTGCAAGAGCATTGAAGAGTTGCAATATGTCTTGATTGATAAACTGCAAGCGATTGATGAAG
TGCAGTCGACAGAGACGCTGATCTCGCTGCAGAATCCTATTAGTCGTAATGTGAAGCCTTAA

Upstream 100 bases:

>100_bases
CCTATGGTAATGGATATTAATAAAAACGACTAGATAAAGTGCTCGCCGAATCTCTTATCTTAAGGTAATTTAAAGATTGA
CCACTATGTAAGGATGCATC

Downstream 100 bases:

>100_bases
GAGCAGGGTTCAGGGGTGATCGTTGTAATTACAGCACAAAAACAGAAAATAACAATGCCTGAAACCTTGCTCTTAAAAAC
AAAAAACCGCAGGTGCATTA

Product: DNA-binding transcriptional regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNQTSKIDDLDRDILQALMNDARTPYAELAKRFDVSPATIHVRIEKMKAANIIEGTEVVVNPKTLGYDVCCFIGINLYAA
RDYHSALAKLDALEEVVEAYYTTGAYNIFVKLMCKSIEELQYVLIDKLQAIDEVQSTETLISLQNPISRNVKP

Sequences:

>Translated_153_residues
MNQTSKIDDLDRDILQALMNDARTPYAELAKRFDVSPATIHVRIEKMKAANIIEGTEVVVNPKTLGYDVCCFIGINLYAA
RDYHSALAKLDALEEVVEAYYTTGAYNIFVKLMCKSIEELQYVLIDKLQAIDEVQSTETLISLQNPISRNVKP
>Mature_153_residues
MNQTSKIDDLDRDILQALMNDARTPYAELAKRFDVSPATIHVRIEKMKAANIIEGTEVVVNPKTLGYDVCCFIGINLYAA
RDYHSALAKLDALEEVVEAYYTTGAYNIFVKLMCKSIEELQYVLIDKLQAIDEVQSTETLISLQNPISRNVKP

Specific function: Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post-transcriptional level [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=147, Percent_Identity=69.3877551020408, Blast_Score=216, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17231; Mature: 17231

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTSKIDDLDRDILQALMNDARTPYAELAKRFDVSPATIHVRIEKMKAANIIEGTEVVV
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEEHHHHCCCCCCCEEEE
NPKTLGYDVCCFIGINLYAARDYHSALAKLDALEEVVEAYYTTGAYNIFVKLMCKSIEEL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QYVLIDKLQAIDEVQSTETLISLQNPISRNVKP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNQTSKIDDLDRDILQALMNDARTPYAELAKRFDVSPATIHVRIEKMKAANIIEGTEVVV
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEEHHHHCCCCCCCEEEE
NPKTLGYDVCCFIGINLYAARDYHSALAKLDALEEVVEAYYTTGAYNIFVKLMCKSIEEL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QYVLIDKLQAIDEVQSTETLISLQNPISRNVKP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]