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The map label for this gene is cspA [C]

Identifier: 58617451

GI number: 58617451

Start: 1148718

End: 1149005

Strand: Reverse

Name: cspA [C]

Synonym: ERGA_CDS_07240

Alternate gene names: 58617451

Gene position: 1149005-1148718 (Counterclockwise)

Preceding gene: 58617454

Following gene: 58617450

Centisome position: 76.6

GC content: 29.86

Gene sequence:

>288_bases
ATGTTAATTTTTAAGGATTGTTTAATGTCTCAACGGTTGGTAGATGACTCAATTTACACTGGGTATGTAAAGTGGTTTAG
TTCAGAAAAGGGTTATGGATTTATTCGTAAAGACCATGGTGATAAAGTAAAAAATATAGGTCAAGATGTGAAAGATATTT
TTGTTCATATTACTGCATTACAAAAAAGTAGAATTAGTGAGTTGAAAGAAGGTCAAAAAGTTAAGTATCAGCTTGATAAA
AATAATGGAAAGTTCTCAGCAATTAACCTCGAAGTTTTAGAATGCTAA

Upstream 100 bases:

>100_bases
TGCAAAAAATATATTAACCTTTACTCTTAATCCAACATAGTATTATATATTCTAATACATGGTATTTTAATGTATTATTG
GTAGTGTAGTATATGTTTTT

Downstream 100 bases:

>100_bases
GATAAAATTATGCGCTATGAGTATTTTTTATTATTTGGTTATATGAAAAAATTTGTAGCGTTCTTTATTTTTTACAAATA
TTCTAAATATAGGTTCCTTT

Product: putative cold shock-like protein cspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MLIFKDCLMSQRLVDDSIYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQLDK
NNGKFSAINLEVLEC

Sequences:

>Translated_95_residues
MLIFKDCLMSQRLVDDSIYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQLDK
NNGKFSAINLEVLEC
>Mature_95_residues
MLIFKDCLMSQRLVDDSIYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQLDK
NNGKFSAINLEVLEC

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=74, Percent_Identity=39.1891891891892, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 10992; Mature: 10992

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIFKDCLMSQRLVDDSIYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITAL
CEEEHHHHHHHHHHCCHHHHHHHHEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
QKSRISELKEGQKVKYQLDKNNGKFSAINLEVLEC
HHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECC
>Mature Secondary Structure
MLIFKDCLMSQRLVDDSIYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITAL
CEEEHHHHHHHHHHCCHHHHHHHHEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
QKSRISELKEGQKVKYQLDKNNGKFSAINLEVLEC
HHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]