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The map label for this gene is xerC [H]

Identifier: 58617409

GI number: 58617409

Start: 1081869

End: 1082825

Strand: Reverse

Name: xerC [H]

Synonym: ERGA_CDS_06820

Alternate gene names: 58617409

Gene position: 1082825-1081869 (Counterclockwise)

Preceding gene: 58617411

Following gene: 58617407

Centisome position: 72.19

GC content: 31.66

Gene sequence:

>957_bases
TTGATTGATTTTAAATATATGTCGAATAAAGAACTCTATGATATTGTAAATGATTGGAAAATATGGATGGAACAAGAGAA
GAGGTATTCTTTGAATACAGTTGTTTCTTATGTAAGAGACCTTGATAAGCTTATAGAGTTCTTACATAAGAGTACAGGGT
GTTCTGTTACATTAAATGATCTTGTGCATGTTAAAATTGGAGATTTGAGAAAATGGTTTGCTTCTAGATATCAATGTGGA
GTTGAAGCAGTTACCAATGCAAGGTCACTGTCTGCTTTGAGAAATTTTTTTCGTTATCTATCACGTATGTACTATATAGA
CAGTCAAGCAGTGTTTTATTTATCTAGGCCACATCTTAAAAAAACATTACCTAAAGTATTAGCAGGATCTCATATTGAGA
TAATACTGAATTATTATAAACAATTACCGCAGAATTGGGTAGATATGCGTAATTTTGCAATCATGATGTTGCTTTATGGA
TCTGGTTTCAGGATTAGTGAAGTAGTTAATTTGAAGTTTCAAGATGTTAGAGAAGATAGACTTTTTATTACTGGTAAAGG
CAATAAGGAAAGAGTAGTACCTATTTTATCAGTGGTATATAAAAGCTTGTGTCAATATATAGAGTGTTGCCCATATTATT
TGGGTGCACGACCTAATAACCAATATATTTTTGTTGGAGTTAGAGGAAAAAAACTGAGTAGGACTCATTTTGCAAACATA
ATGCAAAAGCTTCGTGCTGAAATGGGGTTGCCTGATATTACAACTGCTCATACATTCCGTCATAGTTTTGCTACACATTT
ATTTATTGGTGGTGCTGATATTAGATCAGTTCAGGAACTACTAGGTCATACAAGTTTATCTACTACGCAAATTTATACTC
ATTTAGATCATAAGAGCATTATTGAGCATTATAAAGCTTTTCATCCTCAAATAGTAAAAAAGAATATTGATTATTAA

Upstream 100 bases:

>100_bases
TTGAAATATATTAATAAGTTAAGTATCTCAGTATATTTGTAGTTCTTGCTAAAGACTATTGAGGATTTTTTTATTGATTG
GATAGTATTATTATTTTGTT

Downstream 100 bases:

>100_bases
AAATGTTTTGAACATTATTTGGTCATTGGTATCTTACTGTCTATATTATAATTTTTTTAATATGTTATGTTAAATTTATA
TAGAAATAACTTAATAAATA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MIDFKYMSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCG
VEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNWVDMRNFAIMMLLYG
SGFRISEVVNLKFQDVREDRLFITGKGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANI
MQKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVKKNIDY

Sequences:

>Translated_318_residues
MIDFKYMSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCG
VEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNWVDMRNFAIMMLLYG
SGFRISEVVNLKFQDVREDRLFITGKGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANI
MQKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVKKNIDY
>Mature_318_residues
MIDFKYMSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCG
VEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNWVDMRNFAIMMLLYG
SGFRISEVVNLKFQDVREDRLFITGKGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANI
MQKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVKKNIDY

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=33.7883959044369, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=31.0810810810811, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790768, Length=150, Percent_Identity=30, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37264; Mature: 37264

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFKYMSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLND
CCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
LVHVKIGDLRKWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLK
EEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
KTLPKVLAGSHIEIILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR
HHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCE
LFITGKGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANI
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCCCHHHHHHHH
MQKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSI
HHHHHHHCCCCCCHHHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCCHHHHHHHCCHHHH
IEHYKAFHPQIVKKNIDY
HHHHHHHCHHHHHHCCCC
>Mature Secondary Structure
MIDFKYMSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLND
CCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
LVHVKIGDLRKWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLK
EEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
KTLPKVLAGSHIEIILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR
HHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCE
LFITGKGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANI
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCCCHHHHHHHH
MQKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSI
HHHHHHHCCCCCCHHHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCCHHHHHHHCCHHHH
IEHYKAFHPQIVKKNIDY
HHHHHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]