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The map label for this gene is sco2

Identifier: 58616874

GI number: 58616874

Start: 243121

End: 243750

Strand: Reverse

Name: sco2

Synonym: ERGA_CDS_01470

Alternate gene names: NA

Gene position: 243750-243121 (Counterclockwise)

Preceding gene: 58616875

Following gene: 58616873

Centisome position: 16.25

GC content: 31.43

Gene sequence:

>630_bases
ATGGAGCACATCATGAAGGCTATCAAGTTTATACTTAATCTATGTTTACTATTTGCAGCAATTTTTTTGGGATATTCTTA
CATAACAAAACAAGGTATATTCCAACCAAAGTTACACGACTCTCCTGATGTTAATATATCGAACAAAGCGGATATAAATA
CTAGCTTTAGCTTAATTAATCAGGATGGTATCACGATATCTAGTAAAGACTTCCTTGGAAAACATATGTTAGTCCTTTTT
GGGTTTTCTTCTTGTAAAACTATTTGCCCCATGGAATTAGGGTTAGCATCCACAATTCTAGATCAACTTGGCAACGAAGC
TGACAAGTTACAAGTAGTCTTTATAACTATTGATCCAACAAAAGATACTGTAGAAACATTAAAAGAGTTTCACAAAAATT
TTGACTCACGGATTCAAATGTTAACAGGAAACATTGAAGCTATTAATCAAATAGTACAAGGGTATAAAGTATATGTAGGT
CAACCAGACAATGATAACCAAATTAACCATTCTGGAATAATGTATATTGTAGATAAGAAAGGAGAGTATTTAGCACATTT
TGTACCAGATTTAAAGTCAAAAGAGCCTCAAGTAGATAAATTACTTTCTTTAATTAAGCAGTATCTTTAA

Upstream 100 bases:

>100_bases
AGATAAAACATACTATAAAAATTTTTAGTAACTTGACATAACACAACATTGTTATAGCATATATGATACGTGTTTTTATA
AAAAACTCTAATTTTATACA

Downstream 100 bases:

>100_bases
TTTAATACTTAATTAAATAGAATAGTACAGACTTTTATATAGAATCTAACCTTTAGGATATATATCTAATGAAGAAGTTT
CTTTTAGTCTTATTTTTACT

Product: SCO2 like-protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MEHIMKAIKFILNLCLLFAAIFLGYSYITKQGIFQPKLHDSPDVNISNKADINTSFSLINQDGITISSKDFLGKHMLVLF
GFSSCKTICPMELGLASTILDQLGNEADKLQVVFITIDPTKDTVETLKEFHKNFDSRIQMLTGNIEAINQIVQGYKVYVG
QPDNDNQINHSGIMYIVDKKGEYLAHFVPDLKSKEPQVDKLLSLIKQYL

Sequences:

>Translated_209_residues
MEHIMKAIKFILNLCLLFAAIFLGYSYITKQGIFQPKLHDSPDVNISNKADINTSFSLINQDGITISSKDFLGKHMLVLF
GFSSCKTICPMELGLASTILDQLGNEADKLQVVFITIDPTKDTVETLKEFHKNFDSRIQMLTGNIEAINQIVQGYKVYVG
QPDNDNQINHSGIMYIVDKKGEYLAHFVPDLKSKEPQVDKLLSLIKQYL
>Mature_209_residues
MEHIMKAIKFILNLCLLFAAIFLGYSYITKQGIFQPKLHDSPDVNISNKADINTSFSLINQDGITISSKDFLGKHMLVLF
GFSSCKTICPMELGLASTILDQLGNEADKLQVVFITIDPTKDTVETLKEFHKNFDSRIQMLTGNIEAINQIVQGYKVYVG
QPDNDNQINHSGIMYIVDKKGEYLAHFVPDLKSKEPQVDKLLSLIKQYL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=146, Percent_Identity=33.5616438356164, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182727, Length=132, Percent_Identity=34.0909090909091, Blast_Score=84, Evalue=7e-17,
Organism=Homo sapiens, GI281182722, Length=132, Percent_Identity=34.0909090909091, Blast_Score=84, Evalue=7e-17,
Organism=Homo sapiens, GI281182716, Length=132, Percent_Identity=34.0909090909091, Blast_Score=84, Evalue=7e-17,
Organism=Homo sapiens, GI153791313, Length=132, Percent_Identity=34.0909090909091, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17531419, Length=189, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319511, Length=168, Percent_Identity=31.547619047619, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6319498, Length=170, Percent_Identity=28.2352941176471, Blast_Score=85, Evalue=8e-18,
Organism=Drosophila melanogaster, GI19920710, Length=146, Percent_Identity=34.9315068493151, Blast_Score=108, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23563; Mature: 23563

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHIMKAIKFILNLCLLFAAIFLGYSYITKQGIFQPKLHDSPDVNISNKADINTSFSLIN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEEEC
QDGITISSKDFLGKHMLVLFGFSSCKTICPMELGLASTILDQLGNEADKLQVVFITIDPT
CCCCEECCHHHHHHHHHHEEECHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
KDTVETLKEFHKNFDSRIQMLTGNIEAINQIVQGYKVYVGQPDNDNQINHSGIMYIVDKK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEECC
GEYLAHFVPDLKSKEPQVDKLLSLIKQYL
CCCHHHHHCCCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MEHIMKAIKFILNLCLLFAAIFLGYSYITKQGIFQPKLHDSPDVNISNKADINTSFSLIN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEEEC
QDGITISSKDFLGKHMLVLFGFSSCKTICPMELGLASTILDQLGNEADKLQVVFITIDPT
CCCCEECCHHHHHHHHHHEEECHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
KDTVETLKEFHKNFDSRIQMLTGNIEAINQIVQGYKVYVGQPDNDNQINHSGIMYIVDKK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEECC
GEYLAHFVPDLKSKEPQVDKLLSLIKQYL
CCCHHHHHCCCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]