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The map label for this gene is virD4 [H]

Identifier: 58616740

GI number: 58616740

Start: 12170

End: 14572

Strand: Reverse

Name: virD4 [H]

Synonym: ERGA_CDS_00130

Alternate gene names: 58616740

Gene position: 14572-12170 (Counterclockwise)

Preceding gene: 58616741

Following gene: 58616738

Centisome position: 0.97

GC content: 31.0

Gene sequence:

>2403_bases
ATGGATAGTACAAGCGCAAATCATATTCGCAATATTTTATTTCTATTTCTAGGTGCATTCTTTGGACTAGAATTTTGTTT
CTATTTATCAGGTGTACTATTTATTCTAATGGTATGGGGACCAGATTATTTAGATTTTAACACAATAAATCCTAGTTTTC
ATGATTTTCCAGATAGAATTTGGCCTACAATTTTTACATATATAGAACACTGGTGGCACAATCCTTCACTATATGATGCA
GTATTGTTATCAAAATTAGCATTTTCTTTAATAATACCAATAGGTATTTTCAGTGCTATATTATGGAACTTACGGAATAT
ATTATTCGACTGGAGACCATTTAAGAAAAAAGAATCTCTACATGGTGACTCAAGATGGGCAACAGAAAAAGATATACGTA
AAATAGGTTTACGTAGTAGAAAAGGTATACTATTAGGAAAAGATAAGAGAGGATACTTAATTGCTGACGGTTTTCAACAT
GCATTATTGTTTGCACCAACAGGTTCTGGAAAAGGTGTAGGATTTGTAATACCCAACTTATTGTTTTGGGAAGATTCTGT
AGTAGTACATGACATAAAATTAGAGAACTATGAGTTAACAAGCGGATGGAGAAAGAAAAGAGGACAAGAAGTTTTCGTAT
GGAATCCAGCACAACCAGATGGAATAAGTCATTGCTATAATCCTTTAGATTGGATAAGTTCTAAACCTGGACAAATGGTA
GATGATGTACAAAAAATTGCTAACTTAATAATGCCAGAACAAGATTTTTGGTACAATGAAGCACGTAGTTTATTTGTTGG
AGTAGTTTTATATCTACTTGCAGTACCAGAAAAAGTAAAATCTTTTGGAGAAGTTGTACGTACAATGCGTAGCGACGATG
TTGTATATAACTTAGCAGTAGTACTAGACACAATAGGAAAAAAAATTCACCCAGTTGCGTACATGAACATAGCTGCATTC
TTACAAAAAGCTGATAAAGAACGTTCAGGCGTAGTATCAACAATGAACTCATCTCTAGAACTATGGGCAAATCCATTAAT
AGACACAGCTACAGCATCTAGTGATTTCAATATTCAAGATTTTAAAAGAAAAAAAGTTACAGTATATGTTGGATTAACAC
CAGATAATCTAACTCGTCTCAGACCTTTAATGCAAGTTTTTTATCAACAAGCTACCGAATTTTTATGTAGAAATTTACCA
TCAGATGACGAACCGTATGGTGTATTATTCTTAATGGACGAGTTTCCAACACTTGGAAAAATGGAGCAATTTCAAACTGG
TATTGCATATTTCCGTGGATATAGGGTAAGATTATTTTTAATAATTCAAGATACAGAACAGCTCAAAGGTATATACGAAG
AAGCAGGAATGAATTCATTCTTATCAAACTCCACTTACAGAATTACTTTTGCAGCAAATAATATTGAAACTGCAAACTTA
ATATCACAACTTATAGGAAATAAAACTGTTAATCAAGAATCTTTAAACAGACCAAAATTCTTAGATCTCAATCCAGCATC
TCGTTCATTACATATATCAGAAACACAAAGAGCACTGTTATTACCACAAGAAGTAATAATGTTACCTAGAGATGAACAAA
TACTGTTAATAGAGTCTACTTATCCTATAAAGTCGAAAAAGATAAAATATTTCGAAGACAAAAACTTTACAAAAAAATTA
TTAAAAAGTACTTTTGTTCCTACTCAAGAACCTTACGATCCTAATAACATAAAACCAACATATAAAGAAAATGAAAATAC
TATACCAAGCCTTGAAGGTAATATTCCTGCTAAAACTGATAACCAAGAACATAGTATGTATGAGAGCATAGAAGAAGAAC
CCGATAATTATGATGATGATTTTGATTTTGATGATTTAGATGAATACACAGATGAAGATTATAATCAAGAGTTCGATGAT
GAAAATTATGACCAACATGATGATATGTATAACCATAAGTTAGATACATACAAAGAAGACATTGATGAAGATGAAGATGA
AGATGAAGACGAAGAAGATGATGAAAGTAATGAAGAAGATGTATATGATGATTACCGATACCAAAATGAGTATCATAAGA
ATATAGACAACACTGAAAGTGATACAAATGAAATTAATATGGAATATGATCACAATATAGATCAAAGTGAAGACCAACAT
CATGAACAATACAACAGAAATACTGATCACATAAATGAAGGTACAAATGATTATGATGACCTAGATCATCAATATGAAGA
CGAAGACAACAAGGAAAGTAATGAGGATGAAGAAAATAATAATCACATAAGTCAAAATGATTATCTTTATGAAAATAATG
ACGTTGAGGAAGATATAAAGCAAACTGATAACAAAAAACCAAAAAAGAAAAATACTAGTAAGAAGAAGAATGCTAAACAA
TAA

Upstream 100 bases:

>100_bases
TCTGGTGTAAGATATGTATCAGAAATACTGTTCACTAAATCTTTACAGAAAAATGATTAAATTAAATAAACAAATTTTAT
ATATGTAAGTTATTAGTGTT

Downstream 100 bases:

>100_bases
ATAAAATATCTAATACATTATAAAGTAAGTAACTTGCTAACAGAAAATAAGTGACTTACTTTATAATTCTATTCAACAAT
TATCCTGGAGTAAAAACTAA

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 800; Mature: 800

Protein sequence:

>800_residues
MDSTSANHIRNILFLFLGAFFGLEFCFYLSGVLFILMVWGPDYLDFNTINPSFHDFPDRIWPTIFTYIEHWWHNPSLYDA
VLLSKLAFSLIIPIGIFSAILWNLRNILFDWRPFKKKESLHGDSRWATEKDIRKIGLRSRKGILLGKDKRGYLIADGFQH
ALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWRKKRGQEVFVWNPAQPDGISHCYNPLDWISSKPGQMV
DDVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAF
LQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQDFKRKKVTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRNLP
SDDEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANL
ISQLIGNKTVNQESLNRPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDEQILLIESTYPIKSKKIKYFEDKNFTKKL
LKSTFVPTQEPYDPNNIKPTYKENENTIPSLEGNIPAKTDNQEHSMYESIEEEPDNYDDDFDFDDLDEYTDEDYNQEFDD
ENYDQHDDMYNHKLDTYKEDIDEDEDEDEDEEDDESNEEDVYDDYRYQNEYHKNIDNTESDTNEINMEYDHNIDQSEDQH
HEQYNRNTDHINEGTNDYDDLDHQYEDEDNKESNEDEENNNHISQNDYLYENNDVEEDIKQTDNKKPKKKNTSKKKNAKQ

Sequences:

>Translated_800_residues
MDSTSANHIRNILFLFLGAFFGLEFCFYLSGVLFILMVWGPDYLDFNTINPSFHDFPDRIWPTIFTYIEHWWHNPSLYDA
VLLSKLAFSLIIPIGIFSAILWNLRNILFDWRPFKKKESLHGDSRWATEKDIRKIGLRSRKGILLGKDKRGYLIADGFQH
ALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWRKKRGQEVFVWNPAQPDGISHCYNPLDWISSKPGQMV
DDVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAF
LQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQDFKRKKVTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRNLP
SDDEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANL
ISQLIGNKTVNQESLNRPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDEQILLIESTYPIKSKKIKYFEDKNFTKKL
LKSTFVPTQEPYDPNNIKPTYKENENTIPSLEGNIPAKTDNQEHSMYESIEEEPDNYDDDFDFDDLDEYTDEDYNQEFDD
ENYDQHDDMYNHKLDTYKEDIDEDEDEDEDEEDDESNEEDVYDDYRYQNEYHKNIDNTESDTNEINMEYDHNIDQSEDQH
HEQYNRNTDHINEGTNDYDDLDHQYEDEDNKESNEDEENNNHISQNDYLYENNDVEEDIKQTDNKKPKKKNTSKKKNAKQ
>Mature_800_residues
MDSTSANHIRNILFLFLGAFFGLEFCFYLSGVLFILMVWGPDYLDFNTINPSFHDFPDRIWPTIFTYIEHWWHNPSLYDA
VLLSKLAFSLIIPIGIFSAILWNLRNILFDWRPFKKKESLHGDSRWATEKDIRKIGLRSRKGILLGKDKRGYLIADGFQH
ALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWRKKRGQEVFVWNPAQPDGISHCYNPLDWISSKPGQMV
DDVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAF
LQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQDFKRKKVTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRNLP
SDDEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANL
ISQLIGNKTVNQESLNRPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDEQILLIESTYPIKSKKIKYFEDKNFTKKL
LKSTFVPTQEPYDPNNIKPTYKENENTIPSLEGNIPAKTDNQEHSMYESIEEEPDNYDDDFDFDDLDEYTDEDYNQEFDD
ENYDQHDDMYNHKLDTYKEDIDEDEDEDEDEEDDESNEEDVYDDYRYQNEYHKNIDNTESDTNEINMEYDHNIDQSEDQH
HEQYNRNTDHINEGTNDYDDLDHQYEDEDNKESNEDEENNNHISQNDYLYENNDVEEDIKQTDNKKPKKKNTSKKKNAKQ

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 93466; Mature: 93466

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS00024 HEMOPEXIN ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTSANHIRNILFLFLGAFFGLEFCFYLSGVLFILMVWGPDYLDFNTINPSFHDFPDRI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHH
WPTIFTYIEHWWHNPSLYDAVLLSKLAFSLIIPIGIFSAILWNLRNILFDWRPFKKKESL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
HGDSRWATEKDIRKIGLRSRKGILLGKDKRGYLIADGFQHALLFAPTGSGKGVGFVIPNL
CCCCCCCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCEEECCCE
LFWEDSVVVHDIKLENYELTSGWRKKRGQEVFVWNPAQPDGISHCYNPLDWISSKPGQMV
EEECCCEEEEEEEECCEECCCCHHHCCCCEEEEECCCCCCCHHHHCCCHHHHCCCCCHHH
DDVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
VLDTIGKKIHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQD
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHCCHHHCCCCCCCCCHHH
FKRKKVTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRNLPSDDEPYGVLFLMDEFPTLGK
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCH
MEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANL
HHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHH
ISQLIGNKTVNQESLNRPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDEQILLIEST
HHHHHCCCCCCHHHCCCCCEEECCCCCCCEEHHHHHHHHHCCHHHHCCCCCCEEEEEECC
YPIKSKKIKYFEDKNFTKKLLKSTFVPTQEPYDPNNIKPTYKENENTIPSLEGNIPAKTD
CCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NQEHSMYESIEEEPDNYDDDFDFDDLDEYTDEDYNQEFDDENYDQHDDMYNHKLDTYKED
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
IDEDEDEDEDEEDDESNEEDVYDDYRYQNEYHKNIDNTESDTNEINMEYDHNIDQSEDQH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHH
HEQYNRNTDHINEGTNDYDDLDHQYEDEDNKESNEDEENNNHISQNDYLYENNDVEEDIK
HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHH
QTDNKKPKKKNTSKKKNAKQ
HCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSTSANHIRNILFLFLGAFFGLEFCFYLSGVLFILMVWGPDYLDFNTINPSFHDFPDRI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHH
WPTIFTYIEHWWHNPSLYDAVLLSKLAFSLIIPIGIFSAILWNLRNILFDWRPFKKKESL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
HGDSRWATEKDIRKIGLRSRKGILLGKDKRGYLIADGFQHALLFAPTGSGKGVGFVIPNL
CCCCCCCCHHHHHHHCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCEEECCCE
LFWEDSVVVHDIKLENYELTSGWRKKRGQEVFVWNPAQPDGISHCYNPLDWISSKPGQMV
EEECCCEEEEEEEECCEECCCCHHHCCCCEEEEECCCCCCCHHHHCCCHHHHCCCCCHHH
DDVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
VLDTIGKKIHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQD
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHCCHHHCCCCCCCCCHHH
FKRKKVTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRNLPSDDEPYGVLFLMDEFPTLGK
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCH
MEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANL
HHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHH
ISQLIGNKTVNQESLNRPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDEQILLIEST
HHHHHCCCCCCHHHCCCCCEEECCCCCCCEEHHHHHHHHHCCHHHHCCCCCCEEEEEECC
YPIKSKKIKYFEDKNFTKKLLKSTFVPTQEPYDPNNIKPTYKENENTIPSLEGNIPAKTD
CCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NQEHSMYESIEEEPDNYDDDFDFDDLDEYTDEDYNQEFDDENYDQHDDMYNHKLDTYKED
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
IDEDEDEDEDEEDDESNEEDVYDDYRYQNEYHKNIDNTESDTNEINMEYDHNIDQSEDQH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHH
HEQYNRNTDHINEGTNDYDDLDHQYEDEDNKESNEDEENNNHISQNDYLYENNDVEEDIK
HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHH
QTDNKKPKKKNTSKKKNAKQ
HCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2194232; 11743193; 11743194 [H]