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The map label for this gene is crtN [H]

Identifier: 57652298

GI number: 57652298

Start: 2638834

End: 2640342

Strand: Reverse

Name: crtN [H]

Synonym: SACOL2576

Alternate gene names: 57652298

Gene position: 2640342-2638834 (Counterclockwise)

Preceding gene: 57652299

Following gene: 57652297

Centisome position: 93.98

GC content: 35.32

Gene sequence:

>1509_bases
ATGAAGATTGCAGTAATTGGTGCAGGTGTCACAGGATTAGCAGCGGCAGCCCGTATTGCTTCTCAAGGTCATGAAGTGAC
GATATTTGAAAAAAATAATAATGTAGGCGGGTGTATGAATCAATTAAAGAAAGACGGCTTTACATTTGATATGGGTCCCA
CAATTGTCATGATGCCAGATGTTTATAAAGATGTTTTTACAGCGTGTGGTAAAAATTATGAAGATTATATTGAATTGAGA
CAATTACGTTATATTTACGATGTGTATTTTGACCACGATGATCGTATAACGGTGCCTACAGATTTAGCTGAATTACAGCA
AATGCTAGAAAGTATAGAACCTGGTTCAACGCATGGTTTTATGTCCTTTTTAACGGATGTTTATAAAAAATATGAAATTG
CACGTCGCTATTTCTTAGAAAGAACGTATCGCAAACCGAGTGACTTTTATAATATGACGTCACTTGTGCAAGGTGCTAAG
TTAAAAACGTTAAATCATGCAGATCAGCTAATTGAACATTATATTGATAACGAAAAGATACAAAAGCTTTTAGCGTTTCA
AACGTTATACATAGGAATTGATCCAAAACGAGGCCCGTCACTATATTCAATTATTCCTATGATTGAAATGATGTTTGGTG
TGCATTTTATTAAAGGCGGTATGTATGGCATGGCTCAAGGGCTAGCGCAATTAAATAAAGACTTAGGCGTTAATATTGAA
CTAAATGCTGAAATTGAGCAAATTATTATTGATCCTAAATTCAAACGGGCCGATGCGATAAAAGTGAATGGTGACATAAG
AAAATTTGATAAAATTTTATGTACGGCTGATTTCCCTAGTGTTGCGGAATCATTAATGCCAGATTTTGCACCTATTAAAA
AGTATCCACCACATAAAATTGCAGACTTAGATTACTCTTGTTCAGCATTTTTAATGTATATCGGTATAGATATTGATGTG
ACAGATCAAGTGAGACTTCATAATGTTATTTTTTCAGATGACTTTAGAGGCAATATTGAAGAAATATTTGAGGGACGTTT
ATCATATGATCCTTCTATTTATGTGTATGTACCAGCGGTCGCTGATAAATCACTTGCGCCAGAAGGCAAAACTGGTATTT
ATGTGCTAATGCCGACGCCGGAACTTAAAACAGGTAGCGGAATCGATTGGTCAGATGAAGCTTTGACGCAACAAATAAAG
GAAATTATTTATCGTAAATTAGCAACGATTGAAGTATTTGAAGATATAAAATCGCATATTGTTTCAGAAACAATCTTTAC
GCCAAATGATTTTGAGCAAACGTATCATGCGAAATTTGGTTCGGCATTCGGTTTAATGCCAACTTTAGCGCAAAGTAATT
ATTATCGTCCACAAAATGTATCGCGAGATTATAAAGATTTATATTTTGCAGGTGCAAGTACGCATCCAGGTGCAGGCGTT
CCTATTGTCTTAACGAGTGCGAAAATAACTGTAGATGAAATGATTAAAGATATTGAGCGGGGCGTATAA

Upstream 100 bases:

>100_bases
ACTATACATTACATGAACGTGTTTTTGTGGATAAGAGGAAAAAGGCAAAGTTGTTTCATGAAATAAATAGTAAATATCAT
AGAATATAGGTGGTTGAATA

Downstream 100 bases:

>100_bases
GGGAGTAGTCTAAGAGAAAGATGTGAGAAAAGTATAAGGGGAACGTAAAAGGCATAGTGAAATAAGTATGTGCTTAAGAA
GTTTTATTTAACAATGAATG

Product: squalene synthase

Products: NA

Alternate protein names: 4,4'-diapophytoene desaturase; Diapophytoene desaturase [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGCMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELR
QLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDV
TDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIK
EIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
PIVLTSAKITVDEMIKDIERGV

Sequences:

>Translated_502_residues
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGCMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELR
QLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDV
TDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIK
EIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
PIVLTSAKITVDEMIKDIERGV
>Mature_502_residues
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGCMNQLKKDGFTFDMGPTIVMMPDVYKDVFTACGKNYEDYIELR
QLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGFMSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAK
LKTLNHADQLIEHYIDNEKIQKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKIADLDYSCSAFLMYIGIDIDV
TDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAVADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIK
EIIYRKLATIEVFEDIKSHIVSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
PIVLTSAKITVDEMIKDIERGV

Specific function: Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'- diaponeurosporene (the

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family. CrtN subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 56690; Mature: 56690

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGCMNQLKKDGFTFDMGPTIVMMPD
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCEEEECCH
VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
HHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCEECCCCHHHHHHHHHHCCCCCCHHH
MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH
QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
HHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
ECCCEEEEEECCCCCCCCEEEECCCHHHHHHHEEECCCHHHHHHHCCCCCCCCCCCCCCC
ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
CCCCCCHHEEEEEEECEECCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECC
ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
HHHHCCCCCHHHHHHHHHHCCHHCCCHHHHCCCCCCCCCCCCCHHHHEEECCCCCCCCCC
PIVLTSAKITVDEMIKDIERGV
EEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGCMNQLKKDGFTFDMGPTIVMMPD
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCEEEECCH
VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
HHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCEECCCCHHHHHHHHHHCCCCCCHHH
MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH
QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
HHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
ECCCEEEEEECCCCCCCCEEEECCCHHHHHHHEEECCCHHHHHHHCCCCCCCCCCCCCCC
ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
CCCCCCHHEEEEEEECEECCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECC
ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
HHHHCCCCCHHHHHHHHHHCCHHCCCHHHHCCCCCCCCCCCCCHHHHEEECCCCCCCCCC
PIVLTSAKITVDEMIKDIERGV
EEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA