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The map label for this gene is ctsF [H]

Identifier: 57238493

GI number: 57238493

Start: 1542540

End: 1543721

Strand: Reverse

Name: ctsF [H]

Synonym: CJE1643

Alternate gene names: 57238493

Gene position: 1543721-1542540 (Counterclockwise)

Preceding gene: 57238494

Following gene: 57238482

Centisome position: 86.83

GC content: 25.8

Gene sequence:

>1182_bases
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Upstream 100 bases:

>100_bases
AGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGGTCTTACAAGTATAGAT
GAGCTTTTAAGGGTTGTAAG

Downstream 100 bases:

>100_bases
AATAATCCCAAGCTACTTTAATAATAGTAGCTCCTACAACGATTAAAAATAAAGTTTTTATAAACTTTCCATTAGTTTTT
AACACAAGTTTTGAACCCAA

Product: general secretory pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Sequences:

>Translated_393_residues
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN
>Mature_393_residues
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=402, Percent_Identity=20.3980099502488, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786295, Length=353, Percent_Identity=20.9631728045326, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45751; Mature: 45751

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILF
CCCEEEEEEECCCCHHHEEECCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCHHHH
FKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTLVFLSIIGAFLFLMLFVVPN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
FKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCCHHHHHHHHHHH
IDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILF
CCCEEEEEEECCCCHHHEEECCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCHHHH
FKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPTLVFLSIIGAFLFLMLFVVPN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
FKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCCHHHHHHHHHHH
IDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]