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The map label for this gene is 57238210

Identifier: 57238210

GI number: 57238210

Start: 628220

End: 628870

Strand: Reverse

Name: 57238210

Synonym: CJE0697

Alternate gene names: NA

Gene position: 628870-628220 (Counterclockwise)

Preceding gene: 57238209

Following gene: 57238211

Centisome position: 35.37

GC content: 28.11

Gene sequence:

>651_bases
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Upstream 100 bases:

>100_bases
CCATGGTTCTTTTTGGACGTTACACCTGTAAAGCTAAAAAACCTTTATGTAAAGAATGCTTTTTAAATCATCTTTGCAAA
AGTAAAGATAAGGAACTTAA

Downstream 100 bases:

>100_bases
GGTATAAATTATGGAGATAAATGCTCTTACGATAACCACTCTTTATATCATAGGTATTTCCGCAGAAGGAATGACAGGAG
CTTTAGCTGCAGGACGCCAC

Product: DNA/RNA non-specific endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Sequences:

>Translated_216_residues
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF
>Mature_216_residues
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Specific function: Unknown

COG id: COG1864

COG function: function code F; DNA/RNA endonuclease G, NUC1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA/RNA non-specific endonuclease family [H]

Homologues:

Organism=Homo sapiens, GI53759134, Length=163, Percent_Identity=25.7668711656442, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI224451073, Length=149, Percent_Identity=29.5302013422819, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17505967, Length=224, Percent_Identity=25.4464285714286, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322253, Length=157, Percent_Identity=28.6624203821656, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581065, Length=176, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018524
- InterPro:   IPR001604
- InterPro:   IPR020821 [H]

Pfam domain/function: PF01223 Endonuclease_NS [H]

EC number: NA

Molecular weight: Translated: 25472; Mature: 25472

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAY
CEEEEEEEEEEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHEEEEEEEEECCCEEEEE
KVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNS
EEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCC
VFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLNLVLYDKEPQYIKNRIAIPSF
EEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCCHHHHHHHCCCHHH
YVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF
HHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAY
CEEEEEEEEEEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHEEEEEEEEECCCEEEEE
KVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNS
EEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCC
VFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLNLVLYDKEPQYIKNRIAIPSF
EEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCCHHHHHHHCCCHHH
YVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF
HHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]