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The map label for this gene is yibD [C]

Identifier: 57238016

GI number: 57238016

Start: 1194446

End: 1195996

Strand: Direct

Name: yibD [C]

Synonym: CJE1277

Alternate gene names: 57238016

Gene position: 1194446-1195996 (Clockwise)

Preceding gene: 57238015

Following gene: 57238022

Centisome position: 67.19

GC content: 26.31

Gene sequence:

>1551_bases
ATGAATCTAAAGCAAATAAGTGTTATTATCATCGTAAAAAATGCAAAACAAACCTTGCTTGAATGTTTAAATTCTTTAAA
AGATTTTGATGAAATTATTTTACTTAACAATGAAAGTAGTGATAATACCCTAAATATAGCTAATGAATTTAAAAAAGATT
TTGCTAATTTGCACATTTACCACAGTGCTTTTATAGGTTTTGGAGCTTTAAAAAACCTTGCTTTAAGTTATGCAAAAAAT
GATTGGATTTTAAGCATTGATGCTGATGAAGTGCTTGAAAATGAGTGTATTAAAGAGCTTAAAAATTTAGAACTTCAAGA
AGATAATATCATCGCACTTAGTCGTAAAAATCTCTATAAAGGCGAATGGATAAAGGCATGTGGTTGGTGGCCTGATTATG
TTTTAAGAATTTTTAATAAAAATTTCACTCGTTTTAATGATAATTTAGTACACGAAAGCCTTGTTTTACCAAGTAATGTT
AAAAAAATTCATCTTAAAAATGGATTAAAGCATCATGCTTTTAGAGATATTTCTCACTTAATTAATAAAATGCAGCACTA
CTCAAGCCTTTGGGCAAAACAAAATATACACAAAAAAAGTGGTGTTTTAAAAGCAAATTTAAGAGCTTTTTGGACTTTTT
TTAGAAATTATTTTTTAAAAAATGGCTTTTTGTATAGTTATAAGGGTTTTATAATTAGCGTTTGTAATGCCTTAGGGACT
TTTTTTAAATATATGAAATTATATGAACTTCAAAAGCAAAAGCCAAAAACTTGTGCTTTAATAATAACAACCTATAATCA
AAAAGAACGCCTTAAGTTAGTGCTTGATAGTGTTAAAAATCTAACCTTTTTACCCAATGAAGTTTTAATCGCAGATGATG
GTAGCAAAGAAGATACAGCAAGGCTTATTGAAGAATATCAAAAAAATTTTCCTTGCCCTTTAAAACACATTTGGCAAGAA
GATGAAGGGTTTAGGCTTAGTAAAAGTCGCAACAAAACTATAAAAAACGCTGATAGTGAATATATAATAATTATTGATGG
TGATATGATTTTGGAAAAAGATTTCATAAAAGAACATTTAGAATTTGCACAAAGAAGACTTTTTTTACAAGGTTCAAGAG
TAATTTTAAATGAAAAAGAAAGCGAAGAAATTTTAAACAAAGATGATTATCGCATAGCTTTTAATAAAAAAGATTTTAAA
AGTTCTAAAAATTCTTTTTTAGCTAAAATGCTTTACAGTCTTTCAAAAAAAGATGAAAAAATCTTTAAAAAAACCACTCT
TATTAAAGGTATTAGGGGTTGCAATATGAGTTTTTTTAAAACTGATTTTGATAAACTTGATGGTTTTAATGAAAATTTTA
TTGGTTGGGGTAGAGAAGATAGTGAATTTGTTGCTAGATTTTTATTTAATAAAGGCATTTTTAGACGCTTAAAATTTAAA
GCTATTGCTTATCATATTTATCACAAAGAAAATAGCAAAAAAATGCTCGAAAGCAATCATCAAATTTATTTAGATACCAT
CAAAAATAAAAAAATTTCTTGGAGAAATTAA

Upstream 100 bases:

>100_bases
CACAAAGTTGCGAAGAAATGATTAAAAAAAGACCTTGGGAATACTTTTTTTTTCATAGACGCTTTGCAAGTTATAATAAG
GAAATTTACAAGGATGCAAA

Downstream 100 bases:

>100_bases
GTTTTAAAAATAGCATTTTACATTTATAAATTTTTTTTAATAATTTATATTTAAAATAATTTATTTTTTTATTATTAAAT
AAAAATTTTAAAATATCAAT

Product: lipooligosaccharide biosynthesis glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTLNIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKN
DWILSIDADEVLENECIKELKNLELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNGFLYSYKGFIISVCNALGT
FFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLDSVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQE
DEGFRLSKSRNKTIKNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRIAFNKKDFK
SSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFNENFIGWGREDSEFVARFLFNKGIFRRLKFK
AIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWRN

Sequences:

>Translated_516_residues
MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTLNIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKN
DWILSIDADEVLENECIKELKNLELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNGFLYSYKGFIISVCNALGT
FFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLDSVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQE
DEGFRLSKSRNKTIKNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRIAFNKKDFK
SSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFNENFIGWGREDSEFVARFLFNKGIFRRLKFK
AIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWRN
>Mature_516_residues
MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTLNIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKN
DWILSIDADEVLENECIKELKNLELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNGFLYSYKGFIISVCNALGT
FFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLDSVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQE
DEGFRLSKSRNKTIKNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRIAFNKKDFK
SSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFNENFIGWGREDSEFVARFLFNKGIFRRLKFK
AIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWRN

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 60837; Mature: 60837

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTLNIANEFKKDFANLHIY
CCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEHHHHHHHHHHHEEEH
HSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKNLELQEDNIIALSRKNLYK
HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
GEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNVKKIHLKNGLKHHAFRDISHL
CCHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHEECCCCCCEEEECCCCHHHHHHHHHHH
INKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNGFLYSYKGFIISVCNALGT
HHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHH
FFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLDSVKNLTFLPNEVLIADDGSKEDTA
HHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCEECCCEEEEECCCCCHHHH
RLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTIKNADSEYIIIIDGDMILEKDFIKEHL
HHHHHHHHCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
EFAQRRLFLQGSRVILNEKESEEILNKDDYRIAFNKKDFKSSKNSFLAKMLYSLSKKDEK
HHHHHHHHHCCCEEEECCCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
IFKKTTLIKGIRGCNMSFFKTDFDKLDGFNENFIGWGREDSEFVARFLFNKGIFRRLKFK
HHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWRN
HHEEEEEECCCCHHHHHCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTLNIANEFKKDFANLHIY
CCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEHHHHHHHHHHHEEEH
HSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKNLELQEDNIIALSRKNLYK
HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
GEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNVKKIHLKNGLKHHAFRDISHL
CCHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHEECCCCCCEEEECCCCHHHHHHHHHHH
INKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNGFLYSYKGFIISVCNALGT
HHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHH
FFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLDSVKNLTFLPNEVLIADDGSKEDTA
HHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCEECCCEEEEECCCCCHHHH
RLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTIKNADSEYIIIIDGDMILEKDFIKEHL
HHHHHHHHCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
EFAQRRLFLQGSRVILNEKESEEILNKDDYRIAFNKKDFKSSKNSFLAKMLYSLSKKDEK
HHHHHHHHHCCCEEEECCCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
IFKKTTLIKGIRGCNMSFFKTDFDKLDGFNENFIGWGREDSEFVARFLFNKGIFRRLKFK
HHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWRN
HHEEEEEECCCCHHHHHCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]