BacMap

Definition	Campylobacter jejuni RM1221, complete genome.
Accession	NC_003912
Length	1,777,831

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The map label for this gene is ydfG [H]

Identifier: 57237674

GI number: 57237674

Start: 857944

End: 858693

Strand: Reverse

Name: ydfG [H]

Synonym: CJE0920

Alternate gene names: 57237674

Gene position: 858693-857944 (Counterclockwise)

Preceding gene: 57237675

Following gene: 57237673

Centisome position: 48.3

GC content: 33.87

Gene sequence:

>750_bases
ATGAAAACCGCATTTATTACAGGAGCTAGTTCAGGTTTTGGTAGAGCTTGCGTTGAAGCTTTTATACAAGAAGGCTACAA
AGTAATCGCCCTTGCTAGACGCAAAGAGCGTCTAGAAGAGCTAAAAAATGCTTACAAAGATAAGATTTACACCCTTTGCA
TAGATGTAAGAAATCAAAAAGAAATCTTTGAAGCTATTGAAAATTTACCTAAAGAATTTCAAGAAATTGATGTGCTTTTT
AATAATGCAGGCTTGGCTTTAGGAGTAGATGAATTTGATAAATTAAACCTTGAAGATATTAACACTATGGTAGATACAAA
CATCAAAGGATTTTTATATGTTGCAAAAGCTGTTATTCCTATACTTCGCAAACAAAAAAATGCTTATATTTTTAACTTAG
GTTCGGTTGCGGGACGCAATCCTTATTTTGGAGGCAATGTGTATTGTGGAACCAAAGCCTTTGTAGGACAATTTTCATTG
GCCTTAAGAAATGATCTTAGAGGAAGCAATATCAAAGTAACAAACATTGCTCCAGGACTTTGCAAAACTGAATTTAGTGA
AGTGCGTTTTAAAGGAGATATCCAAAAAGCTGATGCAGTGTATGAAAATACGCAATTTATCAGTGCTAATGATATTGCCA
AAGTGGTAATGTCTATCATTAACCTACCAAGCCATATTAATGTTAATGAAATCGAGCTTATGCCGGTAACACAAACTTGG
AATGGATTTTATATAGAAAGAGATGAATGA

Upstream 100 bases:

>100_bases
TTGACTTTGCGCTAGCAGCAGGTAAAAAAGAAAATGCTGATTATCTAAAAAGCTTGGGTTTAAAAGCAAACGAAAATCTA
TTTTACGGAGGTAGTTTAGA

Downstream 100 bases:

>100_bases
ATAAATTTTTAGTTTCATTGTTTTTACCTTTAGTTGCATTTGCAAACTCCTCAGAAGCAGCTGCAAATGCTAATTTATTT
GGAGCTTTTACGCTTATACC

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNAYKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLF
NNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
NGFYIERDE

Sequences:

>Translated_249_residues
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNAYKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLF
NNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
NGFYIERDE
>Mature_249_residues
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNAYKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLF
NNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
NGFYIERDE

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=27.4193548387097, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI150247226, Length=192, Percent_Identity=31.7708333333333, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI19743808, Length=184, Percent_Identity=29.3478260869565, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40548397, Length=205, Percent_Identity=30.2439024390244, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI214010158, Length=205, Percent_Identity=30.2439024390244, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI214010156, Length=205, Percent_Identity=30.2439024390244, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI22758144, Length=205, Percent_Identity=30.2439024390244, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI7705855, Length=193, Percent_Identity=26.9430051813472, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI22507405, Length=184, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI50726952, Length=186, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=248, Percent_Identity=25, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=188, Percent_Identity=28.1914893617021, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI142976729, Length=187, Percent_Identity=25.668449197861, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI210032110, Length=233, Percent_Identity=24.4635193133047, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI31542939, Length=194, Percent_Identity=27.8350515463918, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4504503, Length=182, Percent_Identity=28.021978021978, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=49.5901639344262, Blast_Score=258, Evalue=2e-70,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=30.1020408163265, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=31.7708333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=195, Percent_Identity=25.1282051282051, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367175, Length=233, Percent_Identity=26.6094420600858, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=216, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=33.1632653061224, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=28.1407035175879, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=214, Percent_Identity=28.9719626168224, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25152911, Length=210, Percent_Identity=28.0952380952381, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=198, Percent_Identity=25.2525252525253, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=27.8606965174129, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=228, Percent_Identity=22.8070175438596, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=205, Percent_Identity=29.7560975609756, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=27.0935960591133, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=204, Percent_Identity=28.921568627451, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=24.2105263157895, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=30.5418719211823, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=227, Percent_Identity=27.3127753303965, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=228, Percent_Identity=30.7017543859649, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=154, Percent_Identity=29.2207792207792, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=29.9492385786802, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=203, Percent_Identity=26.1083743842365, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=194, Percent_Identity=26.8041237113402, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=206, Percent_Identity=26.6990291262136, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=38.3673469387755, Blast_Score=178, Evalue=5e-46,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=24.5989304812834, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=29.2, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI28571387, Length=248, Percent_Identity=31.0483870967742, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24641388, Length=251, Percent_Identity=27.8884462151394, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI281364494, Length=252, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=27.3809523809524, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24663911, Length=253, Percent_Identity=25.6916996047431, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=30.4347826086957, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=31.6939890710383, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=26.4822134387352, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21358495, Length=229, Percent_Identity=27.5109170305677, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648944, Length=243, Percent_Identity=28.8065843621399, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007238, Length=188, Percent_Identity=29.7872340425532, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=26.8041237113402, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=25.2688172043011, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI17737361, Length=193, Percent_Identity=26.9430051813472, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=25.2688172043011, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584744, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28574402, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=25.9803921568627, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357673, Length=190, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355319, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331216, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24665247, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665243, Length=233, Percent_Identity=25.3218884120172, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221331218, Length=233, Percent_Identity=25.3218884120172, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24639444, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27989; Mature: 27989

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNAYKDKIYTLCIDVRNQK
CCEEEEECCCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHCEEEEEEECCCHH
EIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAVIP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
ILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSLALRNDLRGSNIKVTNIAPGL
HHHCCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCH
CKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
HHHHHHHHHCCCCCHHHHHHHHCCEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
NGFYIERDE
CCEEEEECC
>Mature Secondary Structure
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNAYKDKIYTLCIDVRNQK
CCEEEEECCCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHCEEEEEEECCCHH
EIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAVIP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
ILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSLALRNDLRGSNIKVTNIAPGL
HHHCCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCH
CKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
HHHHHHHHHCCCCCHHHHHHHHCCEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
NGFYIERDE
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]