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The map label for this gene is csd [H]

Identifier: 57237636

GI number: 57237636

Start: 819625

End: 820893

Strand: Reverse

Name: csd [H]

Synonym: CJE0882

Alternate gene names: 57237636

Gene position: 820893-819625 (Counterclockwise)

Preceding gene: 57237640

Following gene: 57237621

Centisome position: 46.17

GC content: 30.81

Gene sequence:

>1269_bases
TTGCAAATTTCAGATTTAAAAAAAGAATTGATCTTAAAAAAAGGTATTTTGCATTTTGACTTCACAGCAAGTGCTTTAGC
TCTAAAATGTGTAGAAAAAGAAATTTCAAAAATTCTCCCAACCTATGCAAACACACATTCTGATAGCTCTTTGAATTCTT
TTAAAACTCAACAAATTTACGAACAAGCAAGAAAAGATATAAAAAAAAGTTTATCATTAGATGAAAATTTTGCCCTTATA
GCCTGCGGAACAGGATCAAGCAGTGCTATTAAAAAATTTCAAGAATTGATCGGCATTTACATTCCCCCTCTTGTAAAAGA
AAGATATTTTACGCAAATTGATAAAAATACCTTACCTTTAGTTATCGTAGGGCCTTATGAGCATCATTCTAATGAACTTT
CATTTCGAGAAGGCTTGTGCGAATGTATTAGAATTCCCTTGGATAAAAATGGGGAAATTGATTTTGATTTTCTAGAAAAA
ACTTTACAAAAAAACAAAAAAAGAAAAATAATCGCTAGCTTTTCTTTAGCTTCAAATGTTACTGGGATATTAAGTGATTA
CAAACGCATTTCTGAAATGGTTCGTAAATTTAAAGGGATAGTTGCTTTTGATGCATCTAGTTTCATTCCCTATAAAAACA
TATCTTGTCAATACTATGATGCGTTGTTTATAAGTTCTCATAAATTAATCGGTGGTATTGGCGGTTCTGGACTTTTAGCT
ATCAAAAAAGATCTTTGTGGAAACAAGCCTAGCTTTGCAGCAGGTGGAACTGTGGGCTATGTTTCTCGCACTTCACAATG
CTACCTTTGCAATGAAGAAGCTTTAGAAGAAGGAGGAACACCTGGAATTTTACAACTCATTCGCGCTAGCTTAGCTTTTA
AAATCAAAGATTCTATAGGGATTAAAAATATAGAAAAAAAAGAAGAAATTCTAAAAGATTATTTTTTTGAAAAACTAAAA
ACTATACCTAATTTAATTTTATACGCAAAGAATTTAAAAACCCGATTGCCTATTTTTGCTTTCAATATCAAAGGAATTTC
TCCTTTTGATATCGCTTACGAACTTAGTAAAAAATACCACATAGAAACACGCGCTGGATGTGCTTGTGCTGGGCCTTATG
GTCATGATTTGCTAGGCTTAAAAGATAATCAAAAACTTAAAACAAAACCAGGTTGGTTAAGAATAAGCTTGCATTATACG
CATGAAAAAGAGGATATTGATTATTTTTTTAATGCTTTAAATAAAACTATAATAAAATTATCACATTAA

Upstream 100 bases:

>100_bases
AAATTCTTATGCAAATCTACAAAGTTCTTAAATTTTATATTTTTCCTTTTATAAAGCATTTTTATAGTATAATTTTAGCA
AATTTTTATAAGGATTGTAT

Downstream 100 bases:

>100_bases
AATATTATAGTTTTATTATTATATATAAAAATTCTATCTTCAAAAGCCAAATCAAGTGCTTTTGAAAGAACATCTTTTTC
TATATTTCTACCTGCTTGCT

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALI
ACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEK
TLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
IKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLK
TIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYT
HEKEDIDYFFNALNKTIIKLSH

Sequences:

>Translated_422_residues
MQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALI
ACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEK
TLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
IKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLK
TIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYT
HEKEDIDYFFNALNKTIIKLSH
>Mature_422_residues
MQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALI
ACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEK
TLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
IKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLK
TIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYT
HEKEDIDYFFNALNKTIIKLSH

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=303, Percent_Identity=26.0726072607261, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI193211090, Length=443, Percent_Identity=30.6997742663657, Blast_Score=195, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 47471; Mature: 47471

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00595 AA_TRANSFER_CLASS_5 ; PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIY
CCHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH
EQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPL
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCE
VIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEKTLQKNKKRKIIASFSLASNV
EEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEEEEHHHHHHH
TGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
HHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEHEEEEECCHHEECCCCCCCEE
IKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGTPGILQLIRASLAFKIKDSIG
EEHHHCCCCCCCCCCCCEEEEECCCEEEEECHHHHHCCCCHHHHHHHHHHHHEEECCCCC
IKNIEKKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYH
CCCCHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCEEEEEECCCCHHHHHHHHCCCEE
IETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYTHEKEDIDYFFNALNKTIIKL
EECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHEEE
SH
CC
>Mature Secondary Structure
MQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIY
CCHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH
EQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPL
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCE
VIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEKTLQKNKKRKIIASFSLASNV
EEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEEEEHHHHHHH
TGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
HHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEHEEEEECCHHEECCCCCCCEE
IKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGTPGILQLIRASLAFKIKDSIG
EEHHHCCCCCCCCCCCCEEEEECCCEEEEECHHHHHCCCCHHHHHHHHHHHHEEECCCCC
IKNIEKKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYH
CCCCHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCEEEEEECCCCHHHHHHHHCCCEE
IETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYTHEKEDIDYFFNALNKTIIKL
EECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHEEE
SH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA