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The map label for this gene is sodB [H]

Identifier: 57237176

GI number: 57237176

Start: 165146

End: 165808

Strand: Direct

Name: sodB [H]

Synonym: CJE0164

Alternate gene names: 57237176

Gene position: 165146-165808 (Clockwise)

Preceding gene: 57237173

Following gene: 57237182

Centisome position: 9.29

GC content: 32.58

Gene sequence:

>663_bases
ATGTTTGAATTAAGAAAATTACCTTATGATACCAATGCTTTTGGTGATTTTTTGAGTGCTGAAACTTTTAGCTATCATCA
TGGAAAACATCACAATACTTATGTTACAAATCTAAATAATCTTATTAAAGATACTGAATTTGCAGGTAAAGATCTTGTAA
GTATTATCAAAACTTCAAATGGGGGCGTATTTAATAACGCAGCTCAAGTTTATAATCATGATTTTTATTTTGATTGCATT
AAGCCAAGTACAGGCTGTGGCTGTGGCGGTTCATGTCAAAGTATAGATGCTAATTTACAAGCGGCACTAGAAAAAGAATT
TGGATCTTTAGAAAATTTCAAAGCTGAATTTATCAAAGGCGCTACAGGAGTTTTTGGTTCAGGATGGTTTTGGTTAGTTT
ATAATACTAAAAATCAAAAACTAGAATTTGTAGGTACTTCAAACGCAGCTACACCAATTACTGAAGATAAAGTTCCTTTA
CTTGTTGTAGATGTTTGGGAACATGCTTATTATGTAGATCATCGTAATGCACGCCCTGCTTATTTAGAAAAATTCTATGC
TCATATTAACTGGGAATTTGTTGCAAAAGCTTACGAATGGGCTTTAAAAGAAGGCATGGGATCAGTTAGCTTTTATGCAA
ATGAACTTCACCCTGTAAAATAA

Upstream 100 bases:

>100_bases
AAATAGAAATTTTACCCACTAAGCTTTTAAGATATTTTTACTCTTTTTAATATTATTATGGTAATATTTTCAATATCAAA
CTAAAAATAAAGGAGAAATT

Downstream 100 bases:

>100_bases
TTTAAAGGCATCAAAACGATGCCTTTTTTACTCTCCTAAGCTTGGAGTCATTTCGATAATCTTCCAAGGAAGTCCTTGAG
AATTCAGCTCTTCCATAAAA

Product: superoxide dismutase, Fe

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCI
KPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHPVK

Sequences:

>Translated_220_residues
MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCI
KPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHPVK
>Mature_220_residues
MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCI
KPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHPVK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=34.6733668341709, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=34.6733668341709, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=30.4568527918782, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=57.948717948718, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1790342, Length=211, Percent_Identity=35.0710900473934, Blast_Score=127, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=32.6633165829146, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=30.9644670050761, Blast_Score=98, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6321796, Length=212, Percent_Identity=28.7735849056604, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17136812, Length=206, Percent_Identity=34.9514563106796, Blast_Score=120, Evalue=7e-28,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24813; Mature: 24813

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGKDLVSIIKTSN
CCCCCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHCCCC
GGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKG
CCEECCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCC
ATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPA
CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHH
YLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHPVK
HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
>Mature Secondary Structure
MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGKDLVSIIKTSN
CCCCCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHCCCC
GGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKG
CCEECCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCC
ATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPA
CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHH
YLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHPVK
HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8025686 [H]