Click here to switch to the map view.

The map label for this gene is recJ [H]

Identifier: 57236940

GI number: 57236940

Start: 34131

End: 35702

Strand: Direct

Name: recJ [H]

Synonym: CJE0028

Alternate gene names: 57236940

Gene position: 34131-35702 (Clockwise)

Preceding gene: 57236939

Following gene: 57236941

Centisome position: 1.92

GC content: 29.71

Gene sequence:

>1572_bases
ATGAAGATAATTAATAAAAATGAAATTAAAAAAATTTTGGCTTCACGCTTTGAAAAAGATTTGCATACCAAACTTTGTGA
TCTGCCTTTGCCATGCTGTTTAAAGGATGCATATAAAGCAGCTAATCGCATCAAAGAAGCTGTAGAAAAAAATGAGAAAG
TCGCTATAGTAGGAGATTATGATGTTGATGGAATCATTTCTTGTGTTATTATGGCAGAATTTTTCGATGATATAGGTTTT
GATTATATTATAAGAATTCCGAATCGTTTTAAAGATGGATATGGATTAAATGCTGAGATCATCAACGAACTTGATGTAAA
TTTAATAATAACAGTAGATAATGGAATAGCTGCTCTTGAAGCAGCCAAACTCTGTAAAGAAAAAAATATAGATTTGATTA
TCACTGATCATCATATGCCTCAAGATATTTTACCTGATGCTTTTGCCATTATCAATCCAAAGCAAAAAGATTGTGATTTT
CCAGAAATTGAAATTTGTGGAGCTCAAGTCGCATGGTATTTGATAGCGGCTTTAAAAGAGGTGTGCAAGCTTAAATATGA
CATGTGTAAATTTTTAGAACTTTTGGCGATTGCAATTGTTGCAGATATGATGGAACTTAGAGATTTAAATCGTGCTTTAG
TAAGGCGTGGCATAGATCATATTAACAAATCTAAAAGGGCTGCTTTTAGAGCTATTAAGCATTATTATCAAAAGGATAAA
TTTGCTCTTGATAATATAGGATTTTTAATTGCTCCGCTTATAAATAGTGCTGGAAGAATGGATGATGCAAGTATTTCTTA
TGAATTTTTACACACTAAAGATTTTAATAAAGCTTTAGAATATCTAGAGCAAATTGTTAGTTTTAATGAAAGTCGTAAAG
ATGAAGAAAAACAGCTTTTTGAAGATAGTTTAAATCAAATCGATGAAAACGATTCTTGTATTGTGGTATCGGGTTTAAAT
TGGCATGAAGGTGTTTTAGGGATTGTGGCAAGTCGTTTAGCTAAACATTTTAATAAACCTGCTTTTGTATTTTCTCAAAA
TGAAGAACACTTAAAAGGCAGCGCAAGAAGTGTTGGCAAGATTGATATTTTAGCTTTAATTTCTAAGACAAATTCTATAT
TAAGCAATTATGGTGGTCATAAAGGTGCTGCTGGAATCAGTTTAAACTCTGAAAATTTTGAACAATTTAAAAATAAAATC
AAAAAAGAATGTTCGCAAATTTCTGAAAGTGAATTTTTGGATACAGATGAAATTTTAGGAATCTTAGAACCTAGCGAAAT
TGATTTTGAAATGCTTGAAATTTTAGAATCTTTTGAACCTTTTGGACATAAAAATCCACGACCTTTTTTTGTTTTAGAAA
ATCTTTGTGTAAAAAATAAAAAACTTCTAGGTAAAGATGAAAAACACTTAAAGCTTGTTTTAACTAAGGAAAATAAAACC
ATAGAAGCTTTATTTTTTAATTTTGATAAAGAGCCAGAATTGAATCAAAATATTTCTTTGCTTGGAAGTATTTCTAAGAA
TGAATTTAGGGGAATGGTAACTCCACAGTTTGTTGTTAAAGAGATTTTATAA

Upstream 100 bases:

>100_bases
CATCCTTTTTTCTTGGCTGTGCAGTTTCATCCAGAATTTACATCAAGACTTGAGCATGTTAATCCTGTGATTTGCAGTTT
TATCAAGGCAGCTATAAACT

Downstream 100 bases:

>100_bases
AAATTTTTACTTATAATTTGCATTAATAACATTAAAAAATTAATATACAAGAGATTAAAAAATTATTTATATGTTGTCTT
TTTATAGGAGTATGCATGAA

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGF
DYIIRIPNRFKDGYGLNAEIINELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAIKHYYQKDK
FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLN
WHEGVLGIVASRLAKHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSENFEQFKNKI
KKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVLTKENKT
IEALFFNFDKEPELNQNISLLGSISKNEFRGMVTPQFVVKEIL

Sequences:

>Translated_523_residues
MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGF
DYIIRIPNRFKDGYGLNAEIINELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAIKHYYQKDK
FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLN
WHEGVLGIVASRLAKHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSENFEQFKNKI
KKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVLTKENKT
IEALFFNFDKEPELNQNISLLGSISKNEFRGMVTPQFVVKEIL
>Mature_523_residues
MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGF
DYIIRIPNRFKDGYGLNAEIINELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAIKHYYQKDK
FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLN
WHEGVLGIVASRLAKHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSENFEQFKNKI
KKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVLTKENKT
IEALFFNFDKEPELNQNISLLGSISKNEFRGMVTPQFVVKEIL

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=526, Percent_Identity=29.467680608365, Blast_Score=246, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 59407; Mature: 59407

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
DVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINELDVNLIITVDNGIAALE
CHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCCCHHHHHCCCCEEEEEECCCHHHHH
AAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAALKE
HHHHHHHCCCCEEEECCCCCHHHCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAIKHYYQKDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLF
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHH
EDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNEEHLKGSARSVGK
HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCC
IDILALISKTNSILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISESEFLDTDEILG
HHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
ILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVLTKENKT
CCCCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHCHHHCCCCCCCEEEEEEECCCE
IEALFFNFDKEPELNQNISLLGSISKNEFRGMVTPQFVVKEIL
EEEEEECCCCCCCCCCCHHHHCCCCHHHHCCCCCHHHHHHHHC
>Mature Secondary Structure
MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
DVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINELDVNLIITVDNGIAALE
CHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCCCHHHHHCCCCEEEEEECCCHHHHH
AAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAALKE
HHHHHHHCCCCEEEECCCCCHHHCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAIKHYYQKDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLF
CCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHH
EDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNEEHLKGSARSVGK
HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCC
IDILALISKTNSILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISESEFLDTDEILG
HHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
ILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVLTKENKT
CCCCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHCHHHCCCCCCCEEEEEEECCCE
IEALFFNFDKEPELNQNISLLGSISKNEFRGMVTPQFVVKEIL
EEEEEECCCCCCCCCCCHHHHCCCCHHHHCCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]