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The map label for this gene is ydcN [C]

Identifier: 57235098

GI number: 57235098

Start: 1401624

End: 1401842

Strand: Direct

Name: ydcN [C]

Synonym: DET1555

Alternate gene names: 57235098

Gene position: 1401624-1401842 (Clockwise)

Preceding gene: 57233714

Following gene: 57233701

Centisome position: 95.37

GC content: 46.58

Gene sequence:

>219_bases
ATGATGACTGAAAAGACTATTGAACAACGATTCGGTGAACGCATACGCGATTTAAGGAAGAAAGCCGGAGTCTCGCAAGA
GGAGTTGGCTGATCGGGCAGGTGTTCACAGGACATATTTAGGTGGTATCGAACGGGGCGAGAGGAATCCTTCGCTCAAGA
ATATTTATGCCATTTCCAGGGCCCTCAAAGTGCCAGTTTCAGATCTCTTTAAGACCTAA

Upstream 100 bases:

>100_bases
GAGTGTTTTCATTAAACTCCCCTAATACTTATAAATGATACTTATAGTCTGTAGACCTATAGTCTACATCACCATATCAT
GTTGGTCAATAGGAATTTAT

Downstream 100 bases:

>100_bases
CCAGCCTCTAAAGCTTATTCAATTCTCACCCTTAGCGCTGCAAATTGCCCTTTATTATGACCATACAAAAGGTTCTTTTG
TAAACTATCAAACGGTAATT

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; Transcription Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family Protein; MunI Regulatory Protein; HTH-Type Transcriptional Regulator YazB

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLFKT

Sequences:

>Translated_72_residues
MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLFKT
>Mature_72_residues
MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLFKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8233; Mature: 8233

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISR
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHH
ALKVPVSDLFKT
HHHCCHHHHHCC
>Mature Secondary Structure
MMTEKTIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISR
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHH
ALKVPVSDLFKT
HHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA