Click here to switch to the map view.

The map label for this gene is yjbC [C]

Identifier: 57234401

GI number: 57234401

Start: 726474

End: 727223

Strand: Direct

Name: yjbC [C]

Synonym: DET0789

Alternate gene names: 57234401

Gene position: 726474-727223 (Clockwise)

Preceding gene: 57234402

Following gene: 57234397

Centisome position: 49.43

GC content: 48.67

Gene sequence:

>750_bases
ATGTCATATAATGCATCTTCAGGTACTCCGTTGGTGAAAGTTTTAGTGGAAGCCAGGCTTGGTTCACGCCGCAAAATGGC
GGAGGCTATTAAGCAAGGTCTGGTTACTTTGAACGGACAGAAAGCGGAATCTTACTCCCAGCCGGTAAATACCCAGCAGG
ACAAGGTAACCTTTGAGGGCAAACCTGTTGAACTTAGCCGTATCCGCCGTATATACCTTATGTTAAATAAGCCGCCTGAA
ATAGTCTCTACCACCAGTGATGAACTGGGTCGTAAAACTGTGATGGATTTGCTCCACCGCCGTTATGAGGGGGCAGGTCT
TTTCCCGGTGGGCAGGCTGGACGAGACTACTACCGGCCTTTTGTTGCTTACCAATGACGGTGAACTGACTAACCGCCTTA
CCCACCCCAGCTATGAAATAGAAAAAGAATACCTGATATCCATTGATGCCGCACTTACCCAGGCAGATAAAGAAAGCCTG
GAAAAAGGCATGCTGCTGGATGACGGGCTGACCTCACCTGCCCGCTTAAGCCGGGTTACAGACGAACCGCCGTATAACTA
CAAACTGATAATACACGAAGGTAAAAAAAGGATAGTAAGGCGTATGTTTGCCCATTTGGGATACCAGATAAAGGCTTTGA
AGCGCAGCCGTATAGCCACACTGCGTTTGGGCAAACTGGAAGAGGGTAAAACCCGTGAGCTTACTCCGGGAGAGATAGCC
GCCCTAAAGCGTATTACCCGCCTTAAATAA

Upstream 100 bases:

>100_bases
GGCACAGGAGAAAAAGACTCTGCTGGAATATGGGCGCAGGCTGTATACTTCACTGGATAGCAAGCAGACAAAAGTTTAAT
ACCCATTTAAAGGAATTTTA

Downstream 100 bases:

>100_bases
GGGGTTTACGCCGCATGGTCATGCTGGGCGGAGGCAGGTTTTCCGGGCGGAGATTTAAGTTTTGGCGGCGCATCTGCCAG
TCTTTAAATACCTTTAACCC

Product: RsuA family pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSYNASSGTPLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQQDKVTFEGKPVELSRIRRIYLMLNKPPE
IVSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGLLLLTNDGELTNRLTHPSYEIEKEYLISIDAALTQADKESL
EKGMLLDDGLTSPARLSRVTDEPPYNYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELTPGEIA
ALKRITRLK

Sequences:

>Translated_249_residues
MSYNASSGTPLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQQDKVTFEGKPVELSRIRRIYLMLNKPPE
IVSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGLLLLTNDGELTNRLTHPSYEIEKEYLISIDAALTQADKESL
EKGMLLDDGLTSPARLSRVTDEPPYNYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELTPGEIA
ALKRITRLK
>Mature_248_residues
SYNASSGTPLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQQDKVTFEGKPVELSRIRRIYLMLNKPPEI
VSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGLLLLTNDGELTNRLTHPSYEIEKEYLISIDAALTQADKESLE
KGMLLDDGLTSPARLSRVTDEPPYNYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELTPGEIAA
LKRITRLK

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=238, Percent_Identity=33.1932773109244, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788510, Length=232, Percent_Identity=34.051724137931, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787524, Length=247, Percent_Identity=34.412955465587, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87081838, Length=180, Percent_Identity=33.8888888888889, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28046; Mature: 27915

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNASSGTPLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQQDKVTFEG
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCHHHCCCCCCCCCEEEECC
KPVELSRIRRIYLMLNKPPEIVSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGL
CCCHHHHHHEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
LLLTNDGELTNRLTHPSYEIEKEYLISIDAALTQADKESLEKGMLLDDGLTSPARLSRVT
EEEECCCHHHHHCCCCCCCCCHHHEEEHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHCC
DEPPYNYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELTPGEIA
CCCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHH
ALKRITRLK
HHHHHHHCC
>Mature Secondary Structure 
SYNASSGTPLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQQDKVTFEG
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCHHHCCCCCCCCCEEEECC
KPVELSRIRRIYLMLNKPPEIVSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGL
CCCHHHHHHEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
LLLTNDGELTNRLTHPSYEIEKEYLISIDAALTQADKESLEKGMLLDDGLTSPARLSRVT
EEEECCCHHHHHCCCCCCCCCHHHEEEHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHCC
DEPPYNYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELTPGEIA
CCCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHH
ALKRITRLK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]