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The map label for this gene is sod [H]

Identifier: 57234240

GI number: 57234240

Start: 876927

End: 877505

Strand: Direct

Name: sod [H]

Synonym: DET0956

Alternate gene names: 57234240

Gene position: 876927-877505 (Clockwise)

Preceding gene: 57234241

Following gene: 57234238

Centisome position: 59.67

GC content: 44.21

Gene sequence:

>579_bases
ATGTATACAGCTCATGATTATTCAGCCCTATTAGGACTTGAGGGATTCTCCGACACGCTACTCAAAAATCATTTCACTTT
GTATCAGGGTTATGTGAACAACACCAATAAGCTTTCAGACACACTGAAAACTATGCTGGCCGAAGGCAAAACGGCTGCTC
CGGAGTACGCTGAACTTAAACGCCGCTTCGGATTTGAGTTTGACGGAATGCGCCTGCATGAATACTATTTTTCAAACCTG
GGTAAATCCGCCCCCTTATCAAATACAGGCAAACTTTACCAGGCTCTCTCAGCAGAGTTTGGCAGTTACCAGCTCTGGGA
AACTGACTTTAAAGCCACCGCTTCTATGCGGGGTATAGGCTGGGTAATACTCTACAAAGACTCCCAAACCGGGCGGCTGT
TTAACCAATGGATAAATGAACACGAAACCGGGCATTTGGCAGGAATAACCCCGATACTGGTGATAGACATATTTGAACAC
GCCTTTATGACAGATTACGGACTTAAACGGGCGGATTATATTGCTGCTTTCCTTAAAAATATAAATTGGGACGAAGCTGA
AAAACGATTTCAGAACTAG

Upstream 100 bases:

>100_bases
AAGAATTATTCAAAAAACTTTCAGCCCATGAACGCTACCATGCCGAAGTATTTAAAGACCTGTTAGAATAAAATATATTA
TTATTGCGGAGGGATTTGTT

Downstream 100 bases:

>100_bases
ACCAGATAGATAAAAAAGGGGGGCAGTTTTTTTACTGCCCCACAATTTAATTTTCATATATATTCAAAATAACTATTTTA
ACAACAAAAAAGCCCCTGGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MYTAHDYSALLGLEGFSDTLLKNHFTLYQGYVNNTNKLSDTLKTMLAEGKTAAPEYAELKRRFGFEFDGMRLHEYYFSNL
GKSAPLSNTGKLYQALSAEFGSYQLWETDFKATASMRGIGWVILYKDSQTGRLFNQWINEHETGHLAGITPILVIDIFEH
AFMTDYGLKRADYIAAFLKNINWDEAEKRFQN

Sequences:

>Translated_192_residues
MYTAHDYSALLGLEGFSDTLLKNHFTLYQGYVNNTNKLSDTLKTMLAEGKTAAPEYAELKRRFGFEFDGMRLHEYYFSNL
GKSAPLSNTGKLYQALSAEFGSYQLWETDFKATASMRGIGWVILYKDSQTGRLFNQWINEHETGHLAGITPILVIDIFEH
AFMTDYGLKRADYIAAFLKNINWDEAEKRFQN
>Mature_192_residues
MYTAHDYSALLGLEGFSDTLLKNHFTLYQGYVNNTNKLSDTLKTMLAEGKTAAPEYAELKRRFGFEFDGMRLHEYYFSNL
GKSAPLSNTGKLYQALSAEFGSYQLWETDFKATASMRGIGWVILYKDSQTGRLFNQWINEHETGHLAGITPILVIDIFEH
AFMTDYGLKRADYIAAFLKNINWDEAEKRFQN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=170, Percent_Identity=27.6470588235294, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI67782305, Length=170, Percent_Identity=27.6470588235294, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787946, Length=172, Percent_Identity=31.9767441860465, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17506561, Length=172, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6321796, Length=182, Percent_Identity=29.6703296703297, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22045; Mature: 22045

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTAHDYSALLGLEGFSDTLLKNHFTLYQGYVNNTNKLSDTLKTMLAEGKTAAPEYAELK
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
RRFGFEFDGMRLHEYYFSNLGKSAPLSNTGKLYQALSAEFGSYQLWETDFKATASMRGIG
HHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCE
WVILYKDSQTGRLFNQWINEHETGHLAGITPILVIDIFEHAFMTDYGLKRADYIAAFLKN
EEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
INWDEAEKRFQN
CCCCHHHHHHCC
>Mature Secondary Structure
MYTAHDYSALLGLEGFSDTLLKNHFTLYQGYVNNTNKLSDTLKTMLAEGKTAAPEYAELK
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
RRFGFEFDGMRLHEYYFSNLGKSAPLSNTGKLYQALSAEFGSYQLWETDFKATASMRGIG
HHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCE
WVILYKDSQTGRLFNQWINEHETGHLAGITPILVIDIFEHAFMTDYGLKRADYIAAFLKN
EEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
INWDEAEKRFQN
CCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471500; 2180932 [H]