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The map label for this gene is tapC [H]

Identifier: 57233905

GI number: 57233905

Start: 1222968

End: 1224173

Strand: Direct

Name: tapC [H]

Synonym: DET1352

Alternate gene names: 57233905

Gene position: 1222968-1224173 (Clockwise)

Preceding gene: 57233906

Following gene: 57233896

Centisome position: 83.21

GC content: 50.25

Gene sequence:

>1206_bases
ATGGACTTTAATTACGTAGCTTACGGTCAGGACAAAAGGCTTGTAAAAGGGAAAATCCCGGCGACCTCTCTGGAGGCAGC
CCAGAGGCTGCTGAGCCACAGCGGTTACCAGATTTTAAGCATAAAACCCATTACGCCTTTTTTCAGCACCAGCGGTTCAT
TTAACTTCTCCAAGGTAAAACCCAGAGAAGTTATTCTGTTTTCCCGCCAGCTGGCTCTGCTGCTTGAATCCGGTACGGAT
ATTGTCACTTCACTGGAACTGCTCCAGGAACAGACAACCAATAAACTTTTCCGTGAGATTATAGGCGAGATTGTAAATGA
TATCCGGGGAGGCAGTTCGCTCTCTCTGGCTATGAGCAAACACCCCAAGGCTTTCCCGCCCCTGTATCACCGGGTAATTG
CCGCCGGCGAACAGGGAGGCAGCCTGGAAGTAGTACTGCGTAATCTGGCTAACTTTGTCCAGCGGAACGTGGAAACTGAA
AAGAAGATAAAGAGCGCCCTGACTTACCCCAGCGTAGTGGCGGTGGTAGGTATTCTGGTGCTGCTGCTCATGGTAACCTT
CGTATTACCGGCCTTCACCAGTTTATACTCCCAAATGGGCACTGAACTGCCCGCCGCCACCAGAATACTCATTGGCATAA
GTGATTTTTTTGGGGCTTGGGGTTTGTATGTAACCGGCATTTTTATAGCAACCATAGCCGGGTTGGTAATATATCTGCGC
ACACCCGCAGGACGCTACCAGAGAGACCGGATAGCCCTGAAACTGCCTATAATCGGGCGGATTCTGCTCCTTTCAGAACT
TTCCCGTGCCTGCCAGACTATGTCACTGCTGTTTAAAGCCGGTCTGCCCCTGCCCGAAATCATGAATCAAACCACTGCCG
CAGCCAACAATAAACTTATCAGCAACGCCCTGGCAGAGGTTCAGCATGACCTGATAAGGGGTGAAGGGCTTTCCCGCCCC
ATGACCAAAAACCCCCTCTTCCTGCCCATGATGGTTCAGATGGTAAGCGTGGGTGAAGAAACCGGTAAACTTGATGATAC
CCTTGCTACTGTATCAGCTACTTATGATACCGAAGCTGACGACCGCATAAGTTCCGCCATAGGCATGATACAGCCGGTTA
TGACCATAGCTATAGGCTTGATAGTAGGCTTTATTGCCGTTGCCCTGGTGTCTTCCATGTACTCTTTGTACGGGCAGATT
GGCTAA

Upstream 100 bases:

>100_bases
GATGAAAGATGGTATGCTGAAGGTAAAAGACAATATAACCACCCCCTCCGAAGTACTACGCAGTGCCTATTCTCCGGAGG
AGCAGTATTGAGGTAAGTAG

Downstream 100 bases:

>100_bases
GGATAAATAATATGAGAAGAAAGCTGCTTCGGCGTCAAAAGGGGTTTTCCCTGATTGAGGTGCTTGTGGCACTGGCTATA
CTGGGGCTCATCGGGGTGGC

Product: pilin biogenesis protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MDFNYVAYGQDKRLVKGKIPATSLEAAQRLLSHSGYQILSIKPITPFFSTSGSFNFSKVKPREVILFSRQLALLLESGTD
IVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPPLYHRVIAAGEQGGSLEVVLRNLANFVQRNVETE
KKIKSALTYPSVVAVVGILVLLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFIATIAGLVIYLR
TPAGRYQRDRIALKLPIIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALAEVQHDLIRGEGLSRP
MTKNPLFLPMMVQMVSVGEETGKLDDTLATVSATYDTEADDRISSAIGMIQPVMTIAIGLIVGFIAVALVSSMYSLYGQI
G

Sequences:

>Translated_401_residues
MDFNYVAYGQDKRLVKGKIPATSLEAAQRLLSHSGYQILSIKPITPFFSTSGSFNFSKVKPREVILFSRQLALLLESGTD
IVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPPLYHRVIAAGEQGGSLEVVLRNLANFVQRNVETE
KKIKSALTYPSVVAVVGILVLLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFIATIAGLVIYLR
TPAGRYQRDRIALKLPIIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALAEVQHDLIRGEGLSRP
MTKNPLFLPMMVQMVSVGEETGKLDDTLATVSATYDTEADDRISSAIGMIQPVMTIAIGLIVGFIAVALVSSMYSLYGQI
G
>Mature_401_residues
MDFNYVAYGQDKRLVKGKIPATSLEAAQRLLSHSGYQILSIKPITPFFSTSGSFNFSKVKPREVILFSRQLALLLESGTD
IVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPPLYHRVIAAGEQGGSLEVVLRNLANFVQRNVETE
KKIKSALTYPSVVAVVGILVLLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFIATIAGLVIYLR
TPAGRYQRDRIALKLPIIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLISNALAEVQHDLIRGEGLSRP
MTKNPLFLPMMVQMVSVGEETGKLDDTLATVSATYDTEADDRISSAIGMIQPVMTIAIGLIVGFIAVALVSSMYSLYGQI
G

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=402, Percent_Identity=28.6069651741293, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1786295, Length=338, Percent_Identity=28.4023668639053, Blast_Score=137, Evalue=9e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43634; Mature: 43634

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFNYVAYGQDKRLVKGKIPATSLEAAQRLLSHSGYQILSIKPITPFFSTSGSFNFSKVK
CCCCEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCCCCCCCCC
PREVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSK
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHC
HPKAFPPLYHRVIAAGEQGGSLEVVLRNLANFVQRNVETEKKIKSALTYPSVVAVVGILV
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
LLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFIATIAGLVIYLR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPAGRYQRDRIALKLPIIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLI
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
SNALAEVQHDLIRGEGLSRPMTKNPLFLPMMVQMVSVGEETGKLDDTLATVSATYDTEAD
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCHHCCCHHHHHHHHEECCCCCHH
DRISSAIGMIQPVMTIAIGLIVGFIAVALVSSMYSLYGQIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFNYVAYGQDKRLVKGKIPATSLEAAQRLLSHSGYQILSIKPITPFFSTSGSFNFSKVK
CCCCEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCCCCCCCCC
PREVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSK
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHC
HPKAFPPLYHRVIAAGEQGGSLEVVLRNLANFVQRNVETEKKIKSALTYPSVVAVVGILV
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
LLLMVTFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFIATIAGLVIYLR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPAGRYQRDRIALKLPIIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLI
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
SNALAEVQHDLIRGEGLSRPMTKNPLFLPMMVQMVSVGEETGKLDDTLATVSATYDTEAD
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCHHCCCHHHHHHHHEECCCCCHH
DRISSAIGMIQPVMTIAIGLIVGFIAVALVSSMYSLYGQIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]