Click here to switch to the map view.

The map label for this gene is 57233887

Identifier: 57233887

GI number: 57233887

Start: 1244430

End: 1246061

Strand: Direct

Name: 57233887

Synonym: DET1379

Alternate gene names: NA

Gene position: 1244430-1246061 (Clockwise)

Preceding gene: 57233857

Following gene: 57233885

Centisome position: 84.67

GC content: 49.69

Gene sequence:

>1632_bases
ATGACCCAGCTAGGTGAGCTATTTGCACAGGGTAAAGTTGAGGAAATCTGGGACCGCTGCTGCGGTTTTATTGACCTCAG
CATTGAAGATTTCATGAAAATACAGGAAAGACTTCTTCAGGAACAATTGGAACTCCTTAAAAAATGCGAACTGGGCAAGC
ACATTTTCAACGGGGCAACGCCTACCAATTCAGAGGAACTGAGACGGAGCGTACCCCTTACCACCTATGCGGACTATGCC
CCCTTCCTGACTAAAAGACGCATGGATATACTTCCCAAAAGGCCTATTCTCTGGCAGTATACCTCCGGCAAAAACGGCGA
ATACGCCCACCGCTGGGCTCCGGTAACCGCCCGCCAGATGGACGAGGTAGAGTCTCTGGTTTGGGCAATGGCCCTTTTCA
GCAGCTGCAATAAACGCAAGGATATAAATATCCGCCCGAATGATGCCGTACTCTACGGCATGGCACCGCCGCCTTATGCC
ACCGGCACTATTGCCCGCTGTTTCCCCCATGAAAAGTTTAATTTTCTGCCCAAAGTAGAGGAGGCCGAAAGGATTCCCTT
TGAAGACCGGGTGAAAAAGGGCTTCCAGATGGCTCTGTCTGAAGGGCTGGATTACTGTTTGTCCATGTCCAGTGTAACTG
TAGCCCTGGGCAACCGTTTCAGCCAGAGCAGCGGCAAAATAAGCATGAAATTCCTGCTGTCTAATCCCAAAGCCATGCTG
CGGCTGCTAAAAGGTAAAATCAAGGCCAAGCTGGCCGGCCGCCCCATGCTCCCCAAAGACCTTTGGAAGGTAAAGGGGCT
GATGACCTACGGTATTGACGGCAGTGTCTACCGTGAGAAAATAAAGGAACAGTGGGGGCGCTATCCGCTGGATTTCCACG
GTTGCACCGAAGCCTTTTTAATAGCTACCCAAACCTGGGACTATTCCAGCATGACCTTTGTCCCCTATATGCAGTTCTTT
GAGTTTATACCTGAGGAAGAGGCGGTAAAGAGCTGGCGTGATACCAGTTATCAGCCCAAAACCCTGCTGATGGACGAACT
GAAACCCGGCAACTACGAGGTGGTTATCACCAGTTTCCACGGCGGCCCGTTCGTACGCTACCGCTTAGGCCACCTGGTAC
AGATAACATCTTTACGCAACGAAGCTTTGGATATAGATATCCCACAGATGATTTACCTGACCAGAGTGGATGACCAGATT
GATATTGCCGGTTTTACCCGCCTTTCCGAAAAAGGCATCTGGCAGGCTATTGAAAACAGCCGGGTAGAATATGTGGATTG
GGTAGCCTGCAAGGAACGGGTGAATAATACACCCCGTCTGCACCTTTATATTGAACCCAAAGATAACACCACTCAGACTA
AAGAGGAGGTTACAGCCTCTATCCACGAGGAACTCAAAAAGGTACACCCCGGATACGCTGATTTGGAGTCTTTTATAGGT
TTGATGCCGCTGGATGTGACCTTTTTGCCCAAAGGTGCTTTCAAACTCTACAAAATACGCCAGCAGAACGCCGGAGCAGA
TTTGAGTGATTTGAAGCCCCCGCATCTGAATCCTTCGGCCGGAGATTTGGCTTTTATGCTGAATACTCCCACCAAGGTAA
CTGTCAAACAGGAAGAAGCTGTCAAAGTCTAA

Upstream 100 bases:

>100_bases
AGTATCAAAAAACCACCCCCATGCTGATACCCAACCGCAAAAGCATTGCGGCTTATATAAAACAGCGTAATTTTTCAAAT
ACTATACAAGGAGAAGCAAA

Downstream 100 bases:

>100_bases
AACCCAGGAAACCTGTCCGTATCAGTCAAAAATGGGCGGGGCTCAAAGCTACCGCCCATTTGTATTACTGGGTGTCCATA
TTTGACAACAACACTATTGT

Product: auxin-responsive GH3 protein homolog, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 542

Protein sequence:

>543_residues
MTQLGELFAQGKVEEIWDRCCGFIDLSIEDFMKIQERLLQEQLELLKKCELGKHIFNGATPTNSEELRRSVPLTTYADYA
PFLTKRRMDILPKRPILWQYTSGKNGEYAHRWAPVTARQMDEVESLVWAMALFSSCNKRKDINIRPNDAVLYGMAPPPYA
TGTIARCFPHEKFNFLPKVEEAERIPFEDRVKKGFQMALSEGLDYCLSMSSVTVALGNRFSQSSGKISMKFLLSNPKAML
RLLKGKIKAKLAGRPMLPKDLWKVKGLMTYGIDGSVYREKIKEQWGRYPLDFHGCTEAFLIATQTWDYSSMTFVPYMQFF
EFIPEEEAVKSWRDTSYQPKTLLMDELKPGNYEVVITSFHGGPFVRYRLGHLVQITSLRNEALDIDIPQMIYLTRVDDQI
DIAGFTRLSEKGIWQAIENSRVEYVDWVACKERVNNTPRLHLYIEPKDNTTQTKEEVTASIHEELKKVHPGYADLESFIG
LMPLDVTFLPKGAFKLYKIRQQNAGADLSDLKPPHLNPSAGDLAFMLNTPTKVTVKQEEAVKV

Sequences:

>Translated_543_residues
MTQLGELFAQGKVEEIWDRCCGFIDLSIEDFMKIQERLLQEQLELLKKCELGKHIFNGATPTNSEELRRSVPLTTYADYA
PFLTKRRMDILPKRPILWQYTSGKNGEYAHRWAPVTARQMDEVESLVWAMALFSSCNKRKDINIRPNDAVLYGMAPPPYA
TGTIARCFPHEKFNFLPKVEEAERIPFEDRVKKGFQMALSEGLDYCLSMSSVTVALGNRFSQSSGKISMKFLLSNPKAML
RLLKGKIKAKLAGRPMLPKDLWKVKGLMTYGIDGSVYREKIKEQWGRYPLDFHGCTEAFLIATQTWDYSSMTFVPYMQFF
EFIPEEEAVKSWRDTSYQPKTLLMDELKPGNYEVVITSFHGGPFVRYRLGHLVQITSLRNEALDIDIPQMIYLTRVDDQI
DIAGFTRLSEKGIWQAIENSRVEYVDWVACKERVNNTPRLHLYIEPKDNTTQTKEEVTASIHEELKKVHPGYADLESFIG
LMPLDVTFLPKGAFKLYKIRQQNAGADLSDLKPPHLNPSAGDLAFMLNTPTKVTVKQEEAVKV
>Mature_542_residues
TQLGELFAQGKVEEIWDRCCGFIDLSIEDFMKIQERLLQEQLELLKKCELGKHIFNGATPTNSEELRRSVPLTTYADYAP
FLTKRRMDILPKRPILWQYTSGKNGEYAHRWAPVTARQMDEVESLVWAMALFSSCNKRKDINIRPNDAVLYGMAPPPYAT
GTIARCFPHEKFNFLPKVEEAERIPFEDRVKKGFQMALSEGLDYCLSMSSVTVALGNRFSQSSGKISMKFLLSNPKAMLR
LLKGKIKAKLAGRPMLPKDLWKVKGLMTYGIDGSVYREKIKEQWGRYPLDFHGCTEAFLIATQTWDYSSMTFVPYMQFFE
FIPEEEAVKSWRDTSYQPKTLLMDELKPGNYEVVITSFHGGPFVRYRLGHLVQITSLRNEALDIDIPQMIYLTRVDDQID
IAGFTRLSEKGIWQAIENSRVEYVDWVACKERVNNTPRLHLYIEPKDNTTQTKEEVTASIHEELKKVHPGYADLESFIGL
MPLDVTFLPKGAFKLYKIRQQNAGADLSDLKPPHLNPSAGDLAFMLNTPTKVTVKQEEAVKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62248; Mature: 62116

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLGELFAQGKVEEIWDRCCGFIDLSIEDFMKIQERLLQEQLELLKKCELGKHIFNGAT
CCCHHHHHHCCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTNSEELRRSVPLTTYADYAPFLTKRRMDILPKRPILWQYTSGKNGEYAHRWAPVTARQM
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEECCCHHHHH
DEVESLVWAMALFSSCNKRKDINIRPNDAVLYGMAPPPYATGTIARCFPHEKFNFLPKVE
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
EAERIPFEDRVKKGFQMALSEGLDYCLSMSSVTVALGNRFSQSSGKISMKFLLSNPKAML
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEEECCHHHHH
RLLKGKIKAKLAGRPMLPKDLWKVKGLMTYGIDGSVYREKIKEQWGRYPLDFHGCTEAFL
HHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEE
IATQTWDYSSMTFVPYMQFFEFIPEEEAVKSWRDTSYQPKTLLMDELKPGNYEVVITSFH
EEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEC
GGPFVRYRLGHLVQITSLRNEALDIDIPQMIYLTRVDDQIDIAGFTRLSEKGIWQAIENS
CCCEEEEHHHHHEEEEHHCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHCC
RVEYVDWVACKERVNNTPRLHLYIEPKDNTTQTKEEVTASIHEELKKVHPGYADLESFIG
CCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
LMPLDVTFLPKGAFKLYKIRQQNAGADLSDLKPPHLNPSAGDLAFMLNTPTKVTVKQEEA
CCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCC
VKV
CCC
>Mature Secondary Structure 
TQLGELFAQGKVEEIWDRCCGFIDLSIEDFMKIQERLLQEQLELLKKCELGKHIFNGAT
CCHHHHHHCCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTNSEELRRSVPLTTYADYAPFLTKRRMDILPKRPILWQYTSGKNGEYAHRWAPVTARQM
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEECCCHHHHH
DEVESLVWAMALFSSCNKRKDINIRPNDAVLYGMAPPPYATGTIARCFPHEKFNFLPKVE
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
EAERIPFEDRVKKGFQMALSEGLDYCLSMSSVTVALGNRFSQSSGKISMKFLLSNPKAML
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEEECCHHHHH
RLLKGKIKAKLAGRPMLPKDLWKVKGLMTYGIDGSVYREKIKEQWGRYPLDFHGCTEAFL
HHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEE
IATQTWDYSSMTFVPYMQFFEFIPEEEAVKSWRDTSYQPKTLLMDELKPGNYEVVITSFH
EEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEC
GGPFVRYRLGHLVQITSLRNEALDIDIPQMIYLTRVDDQIDIAGFTRLSEKGIWQAIENS
CCCEEEEHHHHHEEEEHHCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHCC
RVEYVDWVACKERVNNTPRLHLYIEPKDNTTQTKEEVTASIHEELKKVHPGYADLESFIG
CCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
LMPLDVTFLPKGAFKLYKIRQQNAGADLSDLKPPHLNPSAGDLAFMLNTPTKVTVKQEEA
CCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCC
VKV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA