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The map label for this gene is ydaM [C]

Identifier: 57233885

GI number: 57233885

Start: 1246384

End: 1248762

Strand: Direct

Name: ydaM [C]

Synonym: DET1381

Alternate gene names: 57233885

Gene position: 1246384-1248762 (Clockwise)

Preceding gene: 57233887

Following gene: 57233874

Centisome position: 84.8

GC content: 47.84

Gene sequence:

>2379_bases
ATGCTCCATCTGGACGCCCCGCCGGAACAAACCCTGTTCTGGCACAACCTGCTAAATATTGCTCTCTTTACCGCCATACT
TATGTATTACCAGTTTATCCATGTCTATACCAACCGTAAAAACAACCTTTTCCTGATAATAGGTTATATTACACTGGCCC
TGGATATTTTCTTCAATCTGAACGGACAGCTGGTTACCTCTGCTTATATAGAGGACAATATCGTTTACCACACCACTACT
CCATTATTTTATTATATTTTTACATTTGCCCTGCTGTTCATAGGGGTTATCATTTATCATCTGGTACACAAATACCGCCA
ATCTACAGACCCGGCCGAACGCAACCGCACCCTGTACCTGGTACTGGGGTGGGTAATTGTAGTTCTTTCAAGCTATACCA
ATCTTAGTGACAACCCCCGCATCTACGGCCTGCCCCTTGACCATGTGGGCAACTTTATAAACGCGGGAATTATTGTCTAC
GCCATAACCCAGTACCGCCTGATAGACATTAAACTGATAGCCCGCAAGACCCTTACCTATGTTCTTTTGTTTTTCTCCAT
GATAACCATATATGCAGGCGCTTTATTTGTAGCTACACGTATATTCCCCGCCGAAGAAATGTCTACTATAATCCTTATGG
CAACCCTGATTGTGCTGATACTGGCCATGACCGCCCGCCCTCTAAGAACACTTATTGAAAAACGCATAGACAGGTTATTT
TATCAGGAGACCTATGAATCCCGTCTAGCGCTTATGGGTTTTTCACGCAAGATGGGTAACATACTTAATCTGGAGGAACT
GGCCAAATCACTGCTACCTGACCTGGCTAAATCTTTAAATGTAAACAAAACCGCCCTCCTTTTCCCGGATGCTGCCAGCG
GTGAGTTTTCCCTGCAATATGTTTACCCCGGTGATGACCAGCTGAAAACCCATTTCAAACTGGCTTCCGATAACCCTGTC
ATTGCCTGGCTGGATAAGAACAATGCCCAGTTATACCTGAATAAACTGGATACTTTACCGGAACTGAAGGGCTTATGGCA
GATAGAGAAAGAGCAGCTCCAGAAATCAGAGATGGGGTTACTCTATCCCATAAAAAGCCGTGATAAGCTGATAGGCATTA
TCGGGCTGGGCAACAAAAAACGGGGGGGCATATATTCCACCGGAGATTTGGACCTGCTGATAAGTGTAGCCAATCAGGCC
GGTATTATAATAGAAAATGCCCAGCTTTATACTCAGGCCACTATCCGTGCCAATACCGACGAACTTACCCGCCTGTATAA
TCACCGCCACTTTCATGAGCGCATAGAACAGGAAATAGCCCGTGGTTCACGCTTCGGCAATACCTTTTCCCTGATACTGC
TTGACCTTGACCTCTTTAAGGTCTACAACGACGTATACGGCCATCTGGCAGGTGACCAACTGCTCCGCAGGCTGGGTAAA
ATACTGGAAAATTCCATCCGCTCTATTGATATGGCCTTCCGCTACGGAGGCGAGGAATTTGCCATAATGCTGCCCGGCAC
TAAGATTGAAGATGCTTATCATGTAGCCGAACGTATCCGCAAAAATGTTGAGACCAAGTCTTCCTTCCGTGATATGCCCA
TAACCGCTTCCCTGGGTCTGGCTAACTGGCCGAATGACGGGATAATGAAGGAAGAGATTATAGCCAAAGCTGATGCCGCC
CTGTACCACTCCAAAGAGACAGGACGAAACCGTACCAGTCTGCCTGCCGAGTTGAATAGCAACCCCACCCAGGTAATCAA
CTCCGAGCTGGAGGCCCGTCCCAAGGCTATGTCCATTATTTATGCTTTAGCGGCCACGGTTGATGCCAAGGACCATTATA
CTTACGGGCATTCGCGCAAGGTAAGTGAATATGCAGTAGCCCTGGCAGAAATATTAAAACTGCCTGAGGAAAAAGTGGAA
AACATACGGGCGGCCGGACTGCTGCATGATATAGGCAAAATAGGCGTACCCGACCATATTCTGACCAAGCCATCTGCTTT
GGACGATGAAGAATGGGAGCCTATTAAAACCCACCCGGAACTGGGGGTGGAAATACTGAAGCGGATAATTGACCTGGTAA
ACTGCCTGCCGGCAATACTCCATCACCATGAACACTTTGACGGCAGCGGATACCCGTTTGGGCTTAAGGGCGAAAACATA
CCTCTGGAAGCCAGAATACTCAGTATTGCAGATGCCTATGATGCGGTTACCTCACCCCGCCCCTACCGCACCCAACTCCA
TACCGAGCAGGCTATAGCCGAACTGAAACGCTGTGCCGGCTCCCAGTTTGACCCGGCGCTGGTAGATATCTTCTGCCGTG
TTATAAAACCGGAAGATAACCCCCAACTCGAAGCCTCACCGGAAACCGGCACTGACTAA

Upstream 100 bases:

>100_bases
AGTACTGCTAGCCGTTGTCCTGCTTTCTAAACGGCAGCCTATCACCGGTGTTTTTTCTGTCTTCTTAGCTGCAGCCGCTT
TCTGGAGCTTCACCTCTTTT

Downstream 100 bases:

>100_bases
ATAACTATCTTTGCTCTTCTTTACAGAAAACCGGGTCAGTTATAAAGGCTATTCTGTTTCCTGCTGAACAGGGAACTCCA
GGCTGAAATCCAGTGACGGA

Product: GGDEF domain/HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MLHLDAPPEQTLFWHNLLNIALFTAILMYYQFIHVYTNRKNNLFLIIGYITLALDIFFNLNGQLVTSAYIEDNIVYHTTT
PLFYYIFTFALLFIGVIIYHLVHKYRQSTDPAERNRTLYLVLGWVIVVLSSYTNLSDNPRIYGLPLDHVGNFINAGIIVY
AITQYRLIDIKLIARKTLTYVLLFFSMITIYAGALFVATRIFPAEEMSTIILMATLIVLILAMTARPLRTLIEKRIDRLF
YQETYESRLALMGFSRKMGNILNLEELAKSLLPDLAKSLNVNKTALLFPDAASGEFSLQYVYPGDDQLKTHFKLASDNPV
IAWLDKNNAQLYLNKLDTLPELKGLWQIEKEQLQKSEMGLLYPIKSRDKLIGIIGLGNKKRGGIYSTGDLDLLISVANQA
GIIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHLAGDQLLRRLGK
ILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNVETKSSFRDMPITASLGLANWPNDGIMKEEIIAKADAA
LYHSKETGRNRTSLPAELNSNPTQVINSELEARPKAMSIIYALAATVDAKDHYTYGHSRKVSEYAVALAEILKLPEEKVE
NIRAAGLLHDIGKIGVPDHILTKPSALDDEEWEPIKTHPELGVEILKRIIDLVNCLPAILHHHEHFDGSGYPFGLKGENI
PLEARILSIADAYDAVTSPRPYRTQLHTEQAIAELKRCAGSQFDPALVDIFCRVIKPEDNPQLEASPETGTD

Sequences:

>Translated_792_residues
MLHLDAPPEQTLFWHNLLNIALFTAILMYYQFIHVYTNRKNNLFLIIGYITLALDIFFNLNGQLVTSAYIEDNIVYHTTT
PLFYYIFTFALLFIGVIIYHLVHKYRQSTDPAERNRTLYLVLGWVIVVLSSYTNLSDNPRIYGLPLDHVGNFINAGIIVY
AITQYRLIDIKLIARKTLTYVLLFFSMITIYAGALFVATRIFPAEEMSTIILMATLIVLILAMTARPLRTLIEKRIDRLF
YQETYESRLALMGFSRKMGNILNLEELAKSLLPDLAKSLNVNKTALLFPDAASGEFSLQYVYPGDDQLKTHFKLASDNPV
IAWLDKNNAQLYLNKLDTLPELKGLWQIEKEQLQKSEMGLLYPIKSRDKLIGIIGLGNKKRGGIYSTGDLDLLISVANQA
GIIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHLAGDQLLRRLGK
ILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNVETKSSFRDMPITASLGLANWPNDGIMKEEIIAKADAA
LYHSKETGRNRTSLPAELNSNPTQVINSELEARPKAMSIIYALAATVDAKDHYTYGHSRKVSEYAVALAEILKLPEEKVE
NIRAAGLLHDIGKIGVPDHILTKPSALDDEEWEPIKTHPELGVEILKRIIDLVNCLPAILHHHEHFDGSGYPFGLKGENI
PLEARILSIADAYDAVTSPRPYRTQLHTEQAIAELKRCAGSQFDPALVDIFCRVIKPEDNPQLEASPETGTD
>Mature_792_residues
MLHLDAPPEQTLFWHNLLNIALFTAILMYYQFIHVYTNRKNNLFLIIGYITLALDIFFNLNGQLVTSAYIEDNIVYHTTT
PLFYYIFTFALLFIGVIIYHLVHKYRQSTDPAERNRTLYLVLGWVIVVLSSYTNLSDNPRIYGLPLDHVGNFINAGIIVY
AITQYRLIDIKLIARKTLTYVLLFFSMITIYAGALFVATRIFPAEEMSTIILMATLIVLILAMTARPLRTLIEKRIDRLF
YQETYESRLALMGFSRKMGNILNLEELAKSLLPDLAKSLNVNKTALLFPDAASGEFSLQYVYPGDDQLKTHFKLASDNPV
IAWLDKNNAQLYLNKLDTLPELKGLWQIEKEQLQKSEMGLLYPIKSRDKLIGIIGLGNKKRGGIYSTGDLDLLISVANQA
GIIIENAQLYTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHLAGDQLLRRLGK
ILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNVETKSSFRDMPITASLGLANWPNDGIMKEEIIAKADAA
LYHSKETGRNRTSLPAELNSNPTQVINSELEARPKAMSIIYALAATVDAKDHYTYGHSRKVSEYAVALAEILKLPEEKVE
NIRAAGLLHDIGKIGVPDHILTKPSALDDEEWEPIKTHPELGVEILKRIIDLVNCLPAILHHHEHFDGSGYPFGLKGENI
PLEARILSIADAYDAVTSPRPYRTQLHTEQAIAELKRCAGSQFDPALVDIFCRVIKPEDNPQLEASPETGTD

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=39.1812865497076, Blast_Score=109, Evalue=9e-25,
Organism=Escherichia coli, GI145693134, Length=245, Percent_Identity=33.0612244897959, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI87082007, Length=157, Percent_Identity=38.8535031847134, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=34.7058823529412, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=37.0588235294118, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=32, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=31.7919075144509, Blast_Score=94, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=31.0975609756098, Blast_Score=94, Evalue=5e-20,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=31.4285714285714, Blast_Score=83, Evalue=9e-17,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.7485380116959, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87081974, Length=243, Percent_Identity=25.1028806584362, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 89657; Mature: 89657

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLDAPPEQTLFWHNLLNIALFTAILMYYQFIHVYTNRKNNLFLIIGYITLALDIFFNL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCC
NGQLVTSAYIEDNIVYHTTTPLFYYIFTFALLFIGVIIYHLVHKYRQSTDPAERNRTLYL
CCCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEE
VLGWVIVVLSSYTNLSDNPRIYGLPLDHVGNFINAGIIVYAITQYRLIDIKLIARKTLTY
HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCEEEEEEEEEEEEEHHHHHHHHHHH
VLLFFSMITIYAGALFVATRIFPAEEMSTIILMATLIVLILAMTARPLRTLIEKRIDRLF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YQETYESRLALMGFSRKMGNILNLEELAKSLLPDLAKSLNVNKTALLFPDAASGEFSLQY
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEE
VYPGDDQLKTHFKLASDNPVIAWLDKNNAQLYLNKLDTLPELKGLWQIEKEQLQKSEMGL
EECCCCCCCCEEEEECCCCEEEEEECCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCE
LYPIKSRDKLIGIIGLGNKKRGGIYSTGDLDLLISVANQAGIIIENAQLYTQATIRANTD
EEEECCCCCEEEEEECCCCCCCCCCCCCCHHHEEEECCCCCEEEECCEEEEEEEEECCHH
ELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHLAGDQLLRRLGK
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNVETKSSFRDMPITASLGL
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCCEEECCC
ANWPNDGIMKEEIIAKADAALYHSKETGRNRTSLPAELNSNPTQVINSELEARPKAMSII
CCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH
YALAATVDAKDHYTYGHSRKVSEYAVALAEILKLPEEKVENIRAAGLLHDIGKIGVPDHI
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHH
LTKPSALDDEEWEPIKTHPELGVEILKRIIDLVNCLPAILHHHEHFDGSGYPFGLKGENI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PLEARILSIADAYDAVTSPRPYRTQLHTEQAIAELKRCAGSQFDPALVDIFCRVIKPEDN
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
PQLEASPETGTD
CCEECCCCCCCC
>Mature Secondary Structure
MLHLDAPPEQTLFWHNLLNIALFTAILMYYQFIHVYTNRKNNLFLIIGYITLALDIFFNL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCC
NGQLVTSAYIEDNIVYHTTTPLFYYIFTFALLFIGVIIYHLVHKYRQSTDPAERNRTLYL
CCCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEE
VLGWVIVVLSSYTNLSDNPRIYGLPLDHVGNFINAGIIVYAITQYRLIDIKLIARKTLTY
HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCEEEEEEEEEEEEEHHHHHHHHHHH
VLLFFSMITIYAGALFVATRIFPAEEMSTIILMATLIVLILAMTARPLRTLIEKRIDRLF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YQETYESRLALMGFSRKMGNILNLEELAKSLLPDLAKSLNVNKTALLFPDAASGEFSLQY
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEE
VYPGDDQLKTHFKLASDNPVIAWLDKNNAQLYLNKLDTLPELKGLWQIEKEQLQKSEMGL
EECCCCCCCCEEEEECCCCEEEEEECCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCE
LYPIKSRDKLIGIIGLGNKKRGGIYSTGDLDLLISVANQAGIIIENAQLYTQATIRANTD
EEEECCCCCEEEEEECCCCCCCCCCCCCCHHHEEEECCCCCEEEECCEEEEEEEEECCHH
ELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHLAGDQLLRRLGK
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNVETKSSFRDMPITASLGL
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCCEEECCC
ANWPNDGIMKEEIIAKADAALYHSKETGRNRTSLPAELNSNPTQVINSELEARPKAMSII
CCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH
YALAATVDAKDHYTYGHSRKVSEYAVALAEILKLPEEKVENIRAAGLLHDIGKIGVPDHI
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHH
LTKPSALDDEEWEPIKTHPELGVEILKRIIDLVNCLPAILHHHEHFDGSGYPFGLKGENI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PLEARILSIADAYDAVTSPRPYRTQLHTEQAIAELKRCAGSQFDPALVDIFCRVIKPEDN
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
PQLEASPETGTD
CCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]