| Definition | Bacillus clausii KSM-K16, complete genome. |
|---|---|
| Accession | NC_006582 |
| Length | 4,303,871 |
Click here to switch to the map view.
The map label for this gene is nplT [H]
Identifier: 56965789
GI number: 56965789
Start: 4199400
End: 4201169
Strand: Direct
Name: nplT [H]
Synonym: ABC4031
Alternate gene names: 56965789
Gene position: 4199400-4201169 (Clockwise)
Preceding gene: 56965774
Following gene: 56965792
Centisome position: 97.57
GC content: 44.12
Gene sequence:
>1770_bases ATGAAAGTAGCGATCTACCATCGCCCGAAAAGTGAAGATGCCTACGCGTATGACAAAGATACGATCCACATTCGTCTGCG CACGCGCAAAGACGATGCTCACGAGGTCATGCTTATTTATGGAGATCCTTACGATTGGGCGGGAAACGAATGGGTGACTG CCAAAAAAACAATGACACAAGCAGGGGCCGATGGAGAATATGATTATTGGTTTGTGGAAGTGAAGCCGCCCTACCATCGC CTTCGTTACGGGTTCGAAATTAAGGCAAAAGATGAGACGATTTACTATGGAGAAAGTGGGTTTTGCGATACGCCTGCAAA AGACATTAGCGATTATTTCTGTTTTCCGTTTATGAATCAAGCCGATTTGTTTACACCGCCTGAATGGGTTAAAGAAACGA TCTGGTATCAAATCTTTCCTGAACGTTTTGCCAATGGCGATCATTCCCGTGACCCTGAAAATACATTGGCTTGGGGAAGT GCACCACCGACTGCAACCAATTATTTCGGCGGTGACCTTCAAGGGATTGTCGATCATCTTGATTATTTGCAGAAGCTAGG AATTAACGGCATTTATTTAACACCAATCTTTAAAGCGTTTTCCAACCATAAATACGATACGATTGATTATTTAAAAGTAG ATCCCCAATTTGGAGATGAAACGACACTTAAACTGCTTGTCGATGAATGCCATAAGCGCGGCATTCGTGTCATGCTTGAT GCCGTCTTCAACCATGCAGGCCTGTATTTTCCACCTTTTCAAGATGTACTAAAACACCAGCAGGAATCAGAATATAGGGA TTGGTTTCATATCCGCCAATTTCCTGTTCGAGCAGAGGAACCACCTAATTACGATACGTTCGCCTTCACGCCTTTAATGC CGAAACTAAATACAGCAAATGAAGCAGTAAAGGACTATTTATTGAACGTAGCTACGTATTGGATTAAGGAGTTTGACATT GACGGTTGGCGTTTAGATGTCGCCAATGAAGTCGACCATGCCTTCTGGCGTGAGTTTCGCAACAGAGTCAAAGCATTAAA ACCAGATTTGTATATTCTCGGTGAAATATGGCATAACGCTTACCCTTGGCTGCAAGGCGACCAATTCGATGGGGTCATGA ACTACCCGCTCACTGACGCGATTTTTGACTTTGTCCAACACGGCAAAAGCGCAACCACTTTTCAATACGCGGTCACAAAA CATTTGTACAGTTACCCAAAATTGGTGAACGAAGTCCAGTTCAATTTGCTCGGCAGCCATGACACACCAAGAATTTTAAC TGTAAGTGGGGGCAACAAAAAATTAGTCAAACTTTCCTACTTATTGCTGTTTTCCTTTCCTGGCTCACCTTGTATTTATT ACGGGGATGAAATCGGCATGGCCGGAGAAAATGACCCTGGTTGCCGCGCGTGCATGGTGTGGGAGGAAGACCAACAAGAT CAGGAGCTATTCCAATTTCTGCAAAAACTAATTAAGATCCGCAAAACTCACCAAGCAATGGGCACCTATAACACCTTAAA ATTTTATGACTCTGGCACTGAGGATGTGCTGTTGTATTCCACATCCGCTGGCGGAGAGCTTCTTTTATTTGCGGTTAACC GCAGTAAACAAGAAGCAACGGTCAAACTCCCTGATTCACTAAAGAGCCTTGCATTTGTCGATGTCATTTGCGAAAGCCCA TTGCAAAGCGAAGAGCTCCACGTTGAAGGCGAGTGCTTTTTGTTCCTTCATTCTGTCGACGCCAACAAATGCGGCCAAGT AGACAAGTAA
Upstream 100 bases:
>100_bases GTTTGCCTTTTTTCTTGACTTTCACTCTTTCATCTCATAGGCTGAAAATAACAATCAAGAAAACGCTTACGATTCTCGTT AAGAAGGGAGCTTGTTTTGA
Downstream 100 bases:
>100_bases AAAAACAGAATGGCATAGCTCATGACGAGTTATGCCATTCGTGCCGTAGTCTCCCTTCCTACATATAAAAAAGCCTGTCG ACCATCTTAACACTTGTCAA
Product: maltogenic amylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 589; Mature: 589
Protein sequence:
>589_residues MKVAIYHRPKSEDAYAYDKDTIHIRLRTRKDDAHEVMLIYGDPYDWAGNEWVTAKKTMTQAGADGEYDYWFVEVKPPYHR LRYGFEIKAKDETIYYGESGFCDTPAKDISDYFCFPFMNQADLFTPPEWVKETIWYQIFPERFANGDHSRDPENTLAWGS APPTATNYFGGDLQGIVDHLDYLQKLGINGIYLTPIFKAFSNHKYDTIDYLKVDPQFGDETTLKLLVDECHKRGIRVMLD AVFNHAGLYFPPFQDVLKHQQESEYRDWFHIRQFPVRAEEPPNYDTFAFTPLMPKLNTANEAVKDYLLNVATYWIKEFDI DGWRLDVANEVDHAFWREFRNRVKALKPDLYILGEIWHNAYPWLQGDQFDGVMNYPLTDAIFDFVQHGKSATTFQYAVTK HLYSYPKLVNEVQFNLLGSHDTPRILTVSGGNKKLVKLSYLLLFSFPGSPCIYYGDEIGMAGENDPGCRACMVWEEDQQD QELFQFLQKLIKIRKTHQAMGTYNTLKFYDSGTEDVLLYSTSAGGELLLFAVNRSKQEATVKLPDSLKSLAFVDVICESP LQSEELHVEGECFLFLHSVDANKCGQVDK
Sequences:
>Translated_589_residues MKVAIYHRPKSEDAYAYDKDTIHIRLRTRKDDAHEVMLIYGDPYDWAGNEWVTAKKTMTQAGADGEYDYWFVEVKPPYHR LRYGFEIKAKDETIYYGESGFCDTPAKDISDYFCFPFMNQADLFTPPEWVKETIWYQIFPERFANGDHSRDPENTLAWGS APPTATNYFGGDLQGIVDHLDYLQKLGINGIYLTPIFKAFSNHKYDTIDYLKVDPQFGDETTLKLLVDECHKRGIRVMLD AVFNHAGLYFPPFQDVLKHQQESEYRDWFHIRQFPVRAEEPPNYDTFAFTPLMPKLNTANEAVKDYLLNVATYWIKEFDI DGWRLDVANEVDHAFWREFRNRVKALKPDLYILGEIWHNAYPWLQGDQFDGVMNYPLTDAIFDFVQHGKSATTFQYAVTK HLYSYPKLVNEVQFNLLGSHDTPRILTVSGGNKKLVKLSYLLLFSFPGSPCIYYGDEIGMAGENDPGCRACMVWEEDQQD QELFQFLQKLIKIRKTHQAMGTYNTLKFYDSGTEDVLLYSTSAGGELLLFAVNRSKQEATVKLPDSLKSLAFVDVICESP LQSEELHVEGECFLFLHSVDANKCGQVDK >Mature_589_residues MKVAIYHRPKSEDAYAYDKDTIHIRLRTRKDDAHEVMLIYGDPYDWAGNEWVTAKKTMTQAGADGEYDYWFVEVKPPYHR LRYGFEIKAKDETIYYGESGFCDTPAKDISDYFCFPFMNQADLFTPPEWVKETIWYQIFPERFANGDHSRDPENTLAWGS APPTATNYFGGDLQGIVDHLDYLQKLGINGIYLTPIFKAFSNHKYDTIDYLKVDPQFGDETTLKLLVDECHKRGIRVMLD AVFNHAGLYFPPFQDVLKHQQESEYRDWFHIRQFPVRAEEPPNYDTFAFTPLMPKLNTANEAVKDYLLNVATYWIKEFDI DGWRLDVANEVDHAFWREFRNRVKALKPDLYILGEIWHNAYPWLQGDQFDGVMNYPLTDAIFDFVQHGKSATTFQYAVTK HLYSYPKLVNEVQFNLLGSHDTPRILTVSGGNKKLVKLSYLLLFSFPGSPCIYYGDEIGMAGENDPGCRACMVWEEDQQD QELFQFLQKLIKIRKTHQAMGTYNTLKFYDSGTEDVLLYSTSAGGELLLFAVNRSKQEATVKLPDSLKSLAFVDVICESP LQSEELHVEGECFLFLHSVDANKCGQVDK
Specific function: Hydrolyzes pullulan efficiently but only a small amount of starch. Endohydrolysis of 1,4-alpha-glucosidic linkages in pullulan to form panose. Cleaves also (1-6)-alpha-glucosidic linkages to form maltotriose [H]
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI1786604, Length=515, Percent_Identity=32.621359223301, Blast_Score=234, Evalue=1e-62, Organism=Escherichia coli, GI1789995, Length=495, Percent_Identity=25.0505050505051, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1790687, Length=390, Percent_Identity=27.1794871794872, Blast_Score=114, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6322245, Length=229, Percent_Identity=27.9475982532751, Blast_Score=86, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6321726, Length=460, Percent_Identity=23.4782608695652, Blast_Score=80, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6322241, Length=232, Percent_Identity=25.8620689655172, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322021, Length=232, Percent_Identity=25.8620689655172, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324416, Length=232, Percent_Identity=25.8620689655172, Blast_Score=76, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6319776, Length=417, Percent_Identity=22.7817745803357, Blast_Score=75, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6321731, Length=417, Percent_Identity=22.7817745803357, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI221330053, Length=227, Percent_Identity=27.3127753303965, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI24586593, Length=430, Percent_Identity=22.7906976744186, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583749, Length=407, Percent_Identity=24.0786240786241, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583747, Length=407, Percent_Identity=24.0786240786241, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24586587, Length=223, Percent_Identity=26.457399103139, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI45549022, Length=407, Percent_Identity=22.1130221130221, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583745, Length=225, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI24586589, Length=401, Percent_Identity=22.9426433915212, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24586599, Length=227, Percent_Identity=25.1101321585903, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004185 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N [H]
EC number: =3.2.1.135 [H]
Molecular weight: Translated: 68135; Mature: 68135
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVAIYHRPKSEDAYAYDKDTIHIRLRTRKDDAHEVMLIYGDPYDWAGNEWVTAKKTMTQ CEEEEEECCCCCCCEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHH AGADGEYDYWFVEVKPPYHRLRYGFEIKAKDETIYYGESGFCDTPAKDISDYFCFPFMNQ CCCCCCCEEEEEEECCCHHHHHCCEEEEECCCEEEECCCCCCCCCHHHHHHEECCCCCCC ADLFTPPEWVKETIWYQIFPERFANGDHSRDPENTLAWGSAPPTATNYFGGDLQGIVDHL CCCCCCHHHHHHHHHHEECHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHH DYLQKLGINGIYLTPIFKAFSNHKYDTIDYLKVDPQFGDETTLKLLVDECHKRGIRVMLD HHHHHCCCCCEEHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHH AVFNHAGLYFPPFQDVLKHQQESEYRDWFHIRQFPVRAEEPPNYDTFAFTPLMPKLNTAN HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHH EAVKDYLLNVATYWIKEFDIDGWRLDVANEVDHAFWREFRNRVKALKPDLYILGEIWHNA HHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCC YPWLQGDQFDGVMNYPLTDAIFDFVQHGKSATTFQYAVTKHLYSYPKLVNEVQFNLLGSH CCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCC DTPRILTVSGGNKKLVKLSYLLLFSFPGSPCIYYGDEIGMAGENDPGCRACMVWEEDQQD CCCEEEEEECCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCH QELFQFLQKLIKIRKTHQAMGTYNTLKFYDSGTEDVLLYSTSAGGELLLFAVNRSKQEAT HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEE VKLPDSLKSLAFVDVICESPLQSEELHVEGECFLFLHSVDANKCGQVDK EECCHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEEECCCCCCCCCCC >Mature Secondary Structure MKVAIYHRPKSEDAYAYDKDTIHIRLRTRKDDAHEVMLIYGDPYDWAGNEWVTAKKTMTQ CEEEEEECCCCCCCEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHH AGADGEYDYWFVEVKPPYHRLRYGFEIKAKDETIYYGESGFCDTPAKDISDYFCFPFMNQ CCCCCCCEEEEEEECCCHHHHHCCEEEEECCCEEEECCCCCCCCCHHHHHHEECCCCCCC ADLFTPPEWVKETIWYQIFPERFANGDHSRDPENTLAWGSAPPTATNYFGGDLQGIVDHL CCCCCCHHHHHHHHHHEECHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHH DYLQKLGINGIYLTPIFKAFSNHKYDTIDYLKVDPQFGDETTLKLLVDECHKRGIRVMLD HHHHHCCCCCEEHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHH AVFNHAGLYFPPFQDVLKHQQESEYRDWFHIRQFPVRAEEPPNYDTFAFTPLMPKLNTAN HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHH EAVKDYLLNVATYWIKEFDIDGWRLDVANEVDHAFWREFRNRVKALKPDLYILGEIWHNA HHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCC YPWLQGDQFDGVMNYPLTDAIFDFVQHGKSATTFQYAVTKHLYSYPKLVNEVQFNLLGSH CCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCC DTPRILTVSGGNKKLVKLSYLLLFSFPGSPCIYYGDEIGMAGENDPGCRACMVWEEDQQD CCCEEEEEECCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCH QELFQFLQKLIKIRKTHQAMGTYNTLKFYDSGTEDVLLYSTSAGGELLLFAVNRSKQEAT HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEE VKLPDSLKSLAFVDVICESPLQSEELHVEGECFLFLHSVDANKCGQVDK EECCHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2482332; 12547200 [H]