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The map label for this gene is ydhJ [C]

Identifier: 56964948

GI number: 56964948

Start: 3307539

End: 3308288

Strand: Direct

Name: ydhJ [C]

Synonym: ABC3184

Alternate gene names: 56964948

Gene position: 3307539-3308288 (Clockwise)

Preceding gene: 56964947

Following gene: 56964949

Centisome position: 76.85

GC content: 44.27

Gene sequence:

>750_bases
ATGTCTTTTGCAAAACCAACAATCTTTTCCTTCTCTATGCTTGTATTAATTGGCTGTTCGCAAACCGAAGAAGCAAATTA
CACTGGTTCGATTGAAGCGAAAAAACAAACGATTTACAGCCCTTTACAAGGGGAAATCCAAAACATTCATGTTGCTGAAA
GGGAAGCCGTTGCAAAAGATGAGCTGCTCGTGTCTTTAGACGAGCGTTTATTGGAGCTACAAACGGCAGAAGCGGAAGCA
TCGGTACGATTAGCCGACGCTGAAATTGAGCAGGCAGAAAATGAGGCCGCTTCTAATGTGCAATTAGACGCTCTTAACAG
CCAACGCGATCAAGCACAAGCCCGTCTAGAGCAGGCCCAATACCACCAATCAAAAGCAAACATTCATTCACCAAAAGACG
GCGCCATTTTGGAATGGCTAATCGATGAGGGCGATTTTGTTCAAACTGGTACACCACTTGTAACGATTTTGACAGACGCT
CCTTTGGAAACGACGATTTATGTGCCGCAAAGTGAACTTCCCGAGTTTTCTGAGGGGATGGCCGTTCAAATAAGCGCTGT
CGCTTTGCCTGGAGAAACATTCGAAGGAACTGTCAGCTTTATTGAAAAGGAAGCGATATACAGTTCGCAAACGATCGAGA
CAAACGAAGACAAAGCCAGTCAAGTTTTCCCTGTGCACATTACAATTGAAAGCAACGACGAGCAATTAAGAGCCGGGATG
GATGTCGAGATTTGGATTGATTCATTATAA

Upstream 100 bases:

>100_bases
GGCATGCTCTTTGAAAAATTTTTTCATTCCCCATTGATTTTCTCTTTTTCTTCGATTATATTTGAAAGTAAGTACTTACA
TTCAATAACGAGGTGCTGTT

Downstream 100 bases:

>100_bases
GGCGGTCAGGAGCGATTTGAACACATGACAGAGGATGCTATTCGTTGTAACGCGTTGTCAAAAAAGTTTGGTTCTAAGAT
GGCTGTCAAGCCCCTTGACC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1; Fragment [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSFAKPTIFSFSMLVLIGCSQTEEANYTGSIEAKKQTIYSPLQGEIQNIHVAEREAVAKDELLVSLDERLLELQTAEAEA
SVRLADAEIEQAENEAASNVQLDALNSQRDQAQARLEQAQYHQSKANIHSPKDGAILEWLIDEGDFVQTGTPLVTILTDA
PLETTIYVPQSELPEFSEGMAVQISAVALPGETFEGTVSFIEKEAIYSSQTIETNEDKASQVFPVHITIESNDEQLRAGM
DVEIWIDSL

Sequences:

>Translated_249_residues
MSFAKPTIFSFSMLVLIGCSQTEEANYTGSIEAKKQTIYSPLQGEIQNIHVAEREAVAKDELLVSLDERLLELQTAEAEA
SVRLADAEIEQAENEAASNVQLDALNSQRDQAQARLEQAQYHQSKANIHSPKDGAILEWLIDEGDFVQTGTPLVTILTDA
PLETTIYVPQSELPEFSEGMAVQISAVALPGETFEGTVSFIEKEAIYSSQTIETNEDKASQVFPVHITIESNDEQLRAGM
DVEIWIDSL
>Mature_248_residues
SFAKPTIFSFSMLVLIGCSQTEEANYTGSIEAKKQTIYSPLQGEIQNIHVAEREAVAKDELLVSLDERLLELQTAEAEAS
VRLADAEIEQAENEAASNVQLDALNSQRDQAQARLEQAQYHQSKANIHSPKDGAILEWLIDEGDFVQTGTPLVTILTDAP
LETTIYVPQSELPEFSEGMAVQISAVALPGETFEGTVSFIEKEAIYSSQTIETNEDKASQVFPVHITIESNDEQLRAGMD
VEIWIDSL

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0194 family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=213, Percent_Identity=25.3521126760563, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003997
- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 27419; Mature: 27287

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFAKPTIFSFSMLVLIGCSQTEEANYTGSIEAKKQTIYSPLQGEIQNIHVAEREAVAKD
CCCCCCHHHHHEEHHEEECCCCCCCCCCCCEEHHHHHHCCCCCCCHHEEEEHHHHHHHHH
ELLVSLDERLLELQTAEAEASVRLADAEIEQAENEAASNVQLDALNSQRDQAQARLEQAQ
HHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
YHQSKANIHSPKDGAILEWLIDEGDFVQTGTPLVTILTDAPLETTIYVPQSELPEFSEGM
HHHHHCCCCCCCCCCEEEEEECCCCEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
AVQISAVALPGETFEGTVSFIEKEAIYSSQTIETNEDKASQVFPVHITIESNDEQLRAGM
EEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCHHHHCCC
DVEIWIDSL
EEEEEEECC
>Mature Secondary Structure 
SFAKPTIFSFSMLVLIGCSQTEEANYTGSIEAKKQTIYSPLQGEIQNIHVAEREAVAKD
CCCCCHHHHHEEHHEEECCCCCCCCCCCCEEHHHHHHCCCCCCCHHEEEEHHHHHHHHH
ELLVSLDERLLELQTAEAEASVRLADAEIEQAENEAASNVQLDALNSQRDQAQARLEQAQ
HHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
YHQSKANIHSPKDGAILEWLIDEGDFVQTGTPLVTILTDAPLETTIYVPQSELPEFSEGM
HHHHHCCCCCCCCCCEEEEEECCCCEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
AVQISAVALPGETFEGTVSFIEKEAIYSSQTIETNEDKASQVFPVHITIESNDEQLRAGM
EEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCHHHHCCC
DVEIWIDSL
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10788346 [H]