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The map label for this gene is yckA [H]

Identifier: 56964695

GI number: 56964695

Start: 3056925

End: 3057590

Strand: Direct

Name: yckA [H]

Synonym: ABC2931

Alternate gene names: 56964695

Gene position: 3056925-3057590 (Clockwise)

Preceding gene: 56964694

Following gene: 56964697

Centisome position: 71.03

GC content: 44.14

Gene sequence:

>666_bases
ATGCGTTCATTTGATCTAAACCTTGCCATTGAATCCTTTCCGTTTATTTTAAAAGGCTTGCAATATACGCTTTTTGTGGC
TGTAATTAGCATGGCCATTGCACTCGTGTTCGGGTTTATACTAGCGCTTGGACGTATGTCAAAACAAGCATATGTTCGCA
TACCGTGTATGCTGTTTATTTCTTTCAACCGTGGTGTGCCGATTTTGCTCTTATTGTTTTTACTATATGCCGCTTTGCCG
GAATTTGGGTTTCAGCTAAGCGCAGTAGCTGCAGCTATTGTAGGCTTCAGCCTGAATACGTCTGCGTACGTCGCTGAAGT
GAACCGCTCCGCCTTGGCTGCCGTTGACCGTGGACAACATGAAGCAGCCGCTTCCCTAGGGTTGTCAAAAACAAAAGCCA
TGCAGCATATTATTTTGCCACAGGCGGTCCGTATTGCATTGCCGCCGCTTAGCAATATTTTTTTAAGCCTGGTTAAAATG
ACGTCAATCGCGTCCACGATTGCTTTGCCTGAGCTCATGTACCAAGCTCGGATCGTCGGCGGCAGGGAATTTAATTATTT
TACCGTTCTAATCGTTGCTGCCTTGATTTATTGGGGTATTTGTTCACTGTTGTCTCTGTTGCAACGCTACTTAGAAAAAC
GGTTTAATCGTTATATTGAAACTTAA

Upstream 100 bases:

>100_bases
TTGCTGATGGCACTGCCAGTGAGTTGTCCAAACAGTTTTTTAACGGCCAGGATGTCACAACATTGCCTGATGATATTGAA
TTTCAATAGGATGTTGGCAG

Downstream 100 bases:

>100_bases
AAAGCGGGCGGCAGAGAGATTCTGCCGCCCGTTTAGACTGTACATATCGTTCTATTCAATCTTCCCAAACGTATTTCAGT
TTAAAGGAAGCCCCAGACAA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRSFDLNLAIESFPFILKGLQYTLFVAVISMAIALVFGFILALGRMSKQAYVRIPCMLFISFNRGVPILLLLFLLYAALP
EFGFQLSAVAAAIVGFSLNTSAYVAEVNRSALAAVDRGQHEAAASLGLSKTKAMQHIILPQAVRIALPPLSNIFLSLVKM
TSIASTIALPELMYQARIVGGREFNYFTVLIVAALIYWGICSLLSLLQRYLEKRFNRYIET

Sequences:

>Translated_221_residues
MRSFDLNLAIESFPFILKGLQYTLFVAVISMAIALVFGFILALGRMSKQAYVRIPCMLFISFNRGVPILLLLFLLYAALP
EFGFQLSAVAAAIVGFSLNTSAYVAEVNRSALAAVDRGQHEAAASLGLSKTKAMQHIILPQAVRIALPPLSNIFLSLVKM
TSIASTIALPELMYQARIVGGREFNYFTVLIVAALIYWGICSLLSLLQRYLEKRFNRYIET
>Mature_221_residues
MRSFDLNLAIESFPFILKGLQYTLFVAVISMAIALVFGFILALGRMSKQAYVRIPCMLFISFNRGVPILLLLFLLYAALP
EFGFQLSAVAAAIVGFSLNTSAYVAEVNRSALAAVDRGQHEAAASLGLSKTKAMQHIILPQAVRIALPPLSNIFLSLVKM
TSIASTIALPELMYQARIVGGREFNYFTVLIVAALIYWGICSLLSLLQRYLEKRFNRYIET

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=213, Percent_Identity=47.4178403755869, Blast_Score=204, Evalue=4e-54,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=42.3076923076923, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=30.5555555555556, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=33.0188679245283, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=29.7297297297297, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787087, Length=133, Percent_Identity=37.593984962406, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=26.5116279069767, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786874, Length=207, Percent_Identity=28.5024154589372, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=101, Percent_Identity=39.6039603960396, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24451; Mature: 24451

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSFDLNLAIESFPFILKGLQYTLFVAVISMAIALVFGFILALGRMSKQAYVRIPCMLFI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEHEEEEE
SFNRGVPILLLLFLLYAALPEFGFQLSAVAAAIVGFSLNTSAYVAEVNRSALAAVDRGQH
ECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH
EAAASLGLSKTKAMQHIILPQAVRIALPPLSNIFLSLVKMTSIASTIALPELMYQARIVG
HHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GREFNYFTVLIVAALIYWGICSLLSLLQRYLEKRFNRYIET
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSFDLNLAIESFPFILKGLQYTLFVAVISMAIALVFGFILALGRMSKQAYVRIPCMLFI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEHEEEEE
SFNRGVPILLLLFLLYAALPEFGFQLSAVAAAIVGFSLNTSAYVAEVNRSALAAVDRGQH
ECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH
EAAASLGLSKTKAMQHIILPQAVRIALPPLSNIFLSLVKMTSIASTIALPELMYQARIVG
HHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GREFNYFTVLIVAALIYWGICSLLSLLQRYLEKRFNRYIET
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]