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The map label for this gene is yckB [H]

Identifier: 56964694

GI number: 56964694

Start: 3056071

End: 3056913

Strand: Direct

Name: yckB [H]

Synonym: ABC2930

Alternate gene names: 56964694

Gene position: 3056071-3056913 (Clockwise)

Preceding gene: 56964689

Following gene: 56964695

Centisome position: 71.01

GC content: 46.98

Gene sequence:

>843_bases
ATGAAAAAGCAACTGTTTCCTTACATTGGGCTTGCTGCTGCTGCCTTGCTTAGCGCTTGCCAAGGAGGAGAGCCGGCTGA
AGAAAACGCGAGCGACGAGAACCAAGCATGGGATGCAATCGAAGAAAAGGGAACGATCGTCGTTGCCACTGCAGGGACTT
TATTCCCGACGTCCTACCATGATGACGATAATGAACTGACAGGGTTTGAAGTCGAACTTGTTAAAGAAGTAGCTGATCTC
CTCGGTGTCGATGTGACATTTGAAGAAATAGGCGTCGAAACGATGACACAAGCGCTAAACAGCGGACGGGTGCACCTTGC
TGCCAACAGTTTAGCCATTACCGAGGAACGGCAAAAGAACTTTGACTTCTCGTTGCCATATAAGTTTTCTTACGGAAGTG
CGATTGTACGTGCCGATGATTTATCTGGCATTGAAACATTAGAAGACCTAGATGGCAAAATTGCCCTAGGAGCGCCAACA
ACGACGTATATGCAAAAAGCGGAATCGTATGGTGCAGAGCCTTTGTTCTTTGACAATGTCACCAATGACGTTTACTTACG
TGCAGTTGAAACAGGGCAAGGAGATGTGATTTTAAATGACTTTTACTTGCAGTCTATTACAGTTGAGGCGATGCCAGACA
TAGACGTCGTTGTCCACCCAACGCTCTTTTACGACCCGAGTGAACAAGCCTTTATGATGGCAAAAGGGGAGACCCGTCTG
AAAGAGGCAGTCGACGAAGCGCTTGAGCAGCTCCTTGCTGATGGCACTGCCAGTGAGTTGTCCAAACAGTTTTTTAACGG
CCAGGATGTCACAACATTGCCTGATGATATTGAATTTCAATAG

Upstream 100 bases:

>100_bases
TTTGTTGTACTTATTTATAATGGAAGAAACAAGTTTCTTGATTGTTCGTCCGTTTATCTCCATACTAACAAAGGACGTAT
ACTTTCAGGAGGAATGATAG

Downstream 100 bases:

>100_bases
GATGTTGGCAGATGCGTTCATTTGATCTAAACCTTGCCATTGAATCCTTTCCGTTTATTTTAAAAGGCTTGCAATATACG
CTTTTTGTGGCTGTAATTAG

Product: amino acid ABC transporter substrate-binding protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKKQLFPYIGLAAAALLSACQGGEPAEENASDENQAWDAIEEKGTIVVATAGTLFPTSYHDDDNELTGFEVELVKEVADL
LGVDVTFEEIGVETMTQALNSGRVHLAANSLAITEERQKNFDFSLPYKFSYGSAIVRADDLSGIETLEDLDGKIALGAPT
TTYMQKAESYGAEPLFFDNVTNDVYLRAVETGQGDVILNDFYLQSITVEAMPDIDVVVHPTLFYDPSEQAFMMAKGETRL
KEAVDEALEQLLADGTASELSKQFFNGQDVTTLPDDIEFQ

Sequences:

>Translated_280_residues
MKKQLFPYIGLAAAALLSACQGGEPAEENASDENQAWDAIEEKGTIVVATAGTLFPTSYHDDDNELTGFEVELVKEVADL
LGVDVTFEEIGVETMTQALNSGRVHLAANSLAITEERQKNFDFSLPYKFSYGSAIVRADDLSGIETLEDLDGKIALGAPT
TTYMQKAESYGAEPLFFDNVTNDVYLRAVETGQGDVILNDFYLQSITVEAMPDIDVVVHPTLFYDPSEQAFMMAKGETRL
KEAVDEALEQLLADGTASELSKQFFNGQDVTTLPDDIEFQ
>Mature_280_residues
MKKQLFPYIGLAAAALLSACQGGEPAEENASDENQAWDAIEEKGTIVVATAGTLFPTSYHDDDNELTGFEVELVKEVADL
LGVDVTFEEIGVETMTQALNSGRVHLAANSLAITEERQKNFDFSLPYKFSYGSAIVRADDLSGIETLEDLDGKIALGAPT
TTYMQKAESYGAEPLFFDNVTNDVYLRAVETGQGDVILNDFYLQSITVEAMPDIDVVVHPTLFYDPSEQAFMMAKGETRL
KEAVDEALEQLLADGTASELSKQFFNGQDVTTLPDDIEFQ

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=266, Percent_Identity=29.6992481203008, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787031, Length=225, Percent_Identity=27.5555555555556, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 30596; Mature: 30596

Theoretical pI: Translated: 3.78; Mature: 3.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQLFPYIGLAAAALLSACQGGEPAEENASDENQAWDAIEEKGTIVVATAGTLFPTSYH
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
DDDNELTGFEVELVKEVADLLGVDVTFEEIGVETMTQALNSGRVHLAANSLAITEERQKN
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHCCEEEEEECCEEEEHHHHCC
FDFSLPYKFSYGSAIVRADDLSGIETLEDLDGKIALGAPTTTYMQKAESYGAEPLFFDNV
CCCCCCEEECCCCEEEEECCCCCHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEECCC
TNDVYLRAVETGQGDVILNDFYLQSITVEAMPDIDVVVHPTLFYDPSEQAFMMAKGETRL
CCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEECCEEEECCCCCEEEEECCHHHH
KEAVDEALEQLLADGTASELSKQFFNGQDVTTLPDDIEFQ
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKQLFPYIGLAAAALLSACQGGEPAEENASDENQAWDAIEEKGTIVVATAGTLFPTSYH
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
DDDNELTGFEVELVKEVADLLGVDVTFEEIGVETMTQALNSGRVHLAANSLAITEERQKN
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHCCEEEEEECCEEEEHHHHCC
FDFSLPYKFSYGSAIVRADDLSGIETLEDLDGKIALGAPTTTYMQKAESYGAEPLFFDNV
CCCCCCEEECCCCEEEEECCCCCHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEECCC
TNDVYLRAVETGQGDVILNDFYLQSITVEAMPDIDVVVHPTLFYDPSEQAFMMAKGETRL
CCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEECCEEEECCCCCEEEEECCHHHH
KEAVDEALEQLLADGTASELSKQFFNGQDVTTLPDDIEFQ
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 9384377 [H]