Click here to switch to the map view.

The map label for this gene is ytzE [H]

Identifier: 56964561

GI number: 56964561

Start: 2930780

End: 2930998

Strand: Direct

Name: ytzE [H]

Synonym: ABC2797

Alternate gene names: 56964561

Gene position: 2930780-2930998 (Clockwise)

Preceding gene: 56964556

Following gene: 56964569

Centisome position: 68.1

GC content: 39.27

Gene sequence:

>219_bases
TTGCAAACTTCAACTGATCGTATGCTGACTCGAATTAAGTCCATCTACTTGTACATCAAACAGAAGGGAACTGTCACGAC
GAATGAATTAGTTGAAGAGTTCGGCATCACACAGCGCACTGTGCAGCGAGATTTAAATGTATTGGAGTACAATAATTTAG
TCACAAGTTCTGCCAGGGGTAAATGGAAAGCAACTAGTAAAAAAACAAAAGTGTCCTAA

Upstream 100 bases:

>100_bases
ACCTGACGCCCCTATGCGACGAATCTCGGTTCTGCCAGATGCGCTTATGCATAGGATAGCTATAAGGTATAGGAGACGAA
GACGAAGAAGGAGTGGTTTT

Downstream 100 bases:

>100_bases
TATGAGGGAAAAAGCCTTTGAAACCATGGTTTCAAAGGCTTTTCTTTTTTATATACGGGGTTTTCGCCAGCTGTATTTCT
GCTGGCGTTAGCTCACGATA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MQTSTDRMLTRIKSIYLYIKQKGTVTTNELVEEFGITQRTVQRDLNVLEYNNLVTSSARGKWKATSKKTKVS

Sequences:

>Translated_72_residues
MQTSTDRMLTRIKSIYLYIKQKGTVTTNELVEEFGITQRTVQRDLNVLEYNNLVTSSARGKWKATSKKTKVS
>Mature_72_residues
MQTSTDRMLTRIKSIYLYIKQKGTVTTNELVEEFGITQRTVQRDLNVLEYNNLVTSSARGKWKATSKKTKVS

Specific function: Repressor Of The Glycerol-3-Phosphate Regulon. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 8300; Mature: 8300

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTSTDRMLTRIKSIYLYIKQKGTVTTNELVEEFGITQRTVQRDLNVLEYNNLVTSSARG
CCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCHHHHHHHHCCHHHHCCEECCCCCC
KWKATSKKTKVS
CCCCCCCCCCCC
>Mature Secondary Structure
MQTSTDRMLTRIKSIYLYIKQKGTVTTNELVEEFGITQRTVQRDLNVLEYNNLVTSSARG
CCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCHHHHHHHHCCHHHHCCEECCCCCC
KWKATSKKTKVS
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]