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The map label for this gene is ycsE [H]

Identifier: 56963853

GI number: 56963853

Start: 2209227

End: 2209967

Strand: Direct

Name: ycsE [H]

Synonym: ABC2088

Alternate gene names: 56963853

Gene position: 2209227-2209967 (Clockwise)

Preceding gene: 56963850

Following gene: 56963854

Centisome position: 51.33

GC content: 42.38

Gene sequence:

>741_bases
ATGACAGATATAAAAATGATTGCGCTGGATATAGATGGTACGCTGTTGAATGATAACAAAGAGATTACAAGTTGGACGAA
AAACCAAATTAGGAAGGCACAGCATGCAGGTATCACTGTCGTCTTATGCACGGGACGTCCCTTTCCCCACTGCCACACTT
ACATTCAAGATTTGCAATTACATTCCCACTCGATCACATGCAATGGCGGACAAATTTACGCAGTCGACCATTCTGTTATG
ATAGAACATCTTTTCGATGCAGCCACGCTGGCTAATTTATATCACTTTGCCCAAGGACTCGGAATGAATACATGGACGAT
CTCCACAAAGGAAGCGTATTATAACGATTTACCGGAAAACTGCAGCGCATACCAGTGGCTGAAATTCAGCTGCTCCCATA
AGGATGAAGAAGTTTTAAATAAGATGGCAGAGAAAGTGCAATCGATAGACGGCGTAGAAGTTAGCAACCGGACAGCCTTC
ACGGTTGAAGTCAATCCTACCGGCGTGAATAAAGCTGCAGCACTTGAATGGGTTTGTGAAAAGTTAGGAATAACGATGAA
GCATGTAATGGCAATAGGAGACAGCCTCAATGACATAAAAATGATTCAATCTGCCGGTATCGGCATAGCGATGGGCAATG
CCCAAAAAGCAGTGCAGCAAGTAGCCGATGCTATTACTGATACAAATAATAATGATGGAGTTGGAAAAGCAATTGAGAAA
TTTATTTTTGGTGGAGAATGA

Upstream 100 bases:

>100_bases
AACCGAGGTGATATGGTGAGAGTGTTGCTAGACGAAACCGAGCAGCCCTTCTCCTTTTCCTAAACCCAAAATACAGAACA
TACCTACGGAGGTTGAACGG

Downstream 100 bases:

>100_bases
GAATGAGGGGTGTTCAGGCATGTGTATCGAGGCGCTTATGTATAGGAGAAAAATATGCGTGTAAGGACGATTAAATGGGG
AGTCTGCATAACATGAATAA

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTDIKMIALDIDGTLLNDNKEITSWTKNQIRKAQHAGITVVLCTGRPFPHCHTYIQDLQLHSHSITCNGGQIYAVDHSVM
IEHLFDAATLANLYHFAQGLGMNTWTISTKEAYYNDLPENCSAYQWLKFSCSHKDEEVLNKMAEKVQSIDGVEVSNRTAF
TVEVNPTGVNKAAALEWVCEKLGITMKHVMAIGDSLNDIKMIQSAGIGIAMGNAQKAVQQVADAITDTNNNDGVGKAIEK
FIFGGE

Sequences:

>Translated_246_residues
MTDIKMIALDIDGTLLNDNKEITSWTKNQIRKAQHAGITVVLCTGRPFPHCHTYIQDLQLHSHSITCNGGQIYAVDHSVM
IEHLFDAATLANLYHFAQGLGMNTWTISTKEAYYNDLPENCSAYQWLKFSCSHKDEEVLNKMAEKVQSIDGVEVSNRTAF
TVEVNPTGVNKAAALEWVCEKLGITMKHVMAIGDSLNDIKMIQSAGIGIAMGNAQKAVQQVADAITDTNNNDGVGKAIEK
FIFGGE
>Mature_245_residues
TDIKMIALDIDGTLLNDNKEITSWTKNQIRKAQHAGITVVLCTGRPFPHCHTYIQDLQLHSHSITCNGGQIYAVDHSVMI
EHLFDAATLANLYHFAQGLGMNTWTISTKEAYYNDLPENCSAYQWLKFSCSHKDEEVLNKMAEKVQSIDGVEVSNRTAFT
VEVNPTGVNKAAALEWVCEKLGITMKHVMAIGDSLNDIKMIQSAGIGIAMGNAQKAVQQVADAITDTNNNDGVGKAIEKF
IFGGE

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=268, Percent_Identity=32.4626865671642, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1786982, Length=268, Percent_Identity=27.2388059701493, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI48994981, Length=264, Percent_Identity=25.7575757575758, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87081790, Length=268, Percent_Identity=26.4925373134328, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001757
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 27033; Mature: 26902

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIKMIALDIDGTLLNDNKEITSWTKNQIRKAQHAGITVVLCTGRPFPHCHTYIQDLQL
CCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
HSHSITCNGGQIYAVDHSVMIEHLFDAATLANLYHFAQGLGMNTWTISTKEAYYNDLPEN
HCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCC
CSAYQWLKFSCSHKDEEVLNKMAEKVQSIDGVEVSNRTAFTVEVNPTGVNKAAALEWVCE
CCHHHHEEEECCCCHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCCCCHHHHHHHHHH
KLGITMKHVMAIGDSLNDIKMIQSAGIGIAMGNAQKAVQQVADAITDTNNNDGVGKAIEK
HHCHHHHHHHHHCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHH
FIFGGE
HHCCCC
>Mature Secondary Structure 
TDIKMIALDIDGTLLNDNKEITSWTKNQIRKAQHAGITVVLCTGRPFPHCHTYIQDLQL
CCEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
HSHSITCNGGQIYAVDHSVMIEHLFDAATLANLYHFAQGLGMNTWTISTKEAYYNDLPEN
HCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCC
CSAYQWLKFSCSHKDEEVLNKMAEKVQSIDGVEVSNRTAFTVEVNPTGVNKAAALEWVCE
CCHHHHEEEECCCCHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCCCCHHHHHHHHHH
KLGITMKHVMAIGDSLNDIKMIQSAGIGIAMGNAQKAVQQVADAITDTNNNDGVGKAIEK
HHCHHHHHHHHHCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHH
FIFGGE
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]