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The map label for this gene is ykoC [H]

Identifier: 56963700

GI number: 56963700

Start: 2050422

End: 2051219

Strand: Direct

Name: ykoC [H]

Synonym: ABC1935

Alternate gene names: 56963700

Gene position: 2050422-2051219 (Clockwise)

Preceding gene: 56963699

Following gene: 56963701

Centisome position: 47.64

GC content: 43.11

Gene sequence:

>798_bases
GTGGAATACAAATGGAAAGAGACATGGCTTAGCCGTGTGAATCCGAGTTTAAAATTAGTGACAACAATTATTGGTTTTAT
TGCGATTATTTTCGTGCATAATCCTAACGCATTGCTTGTCTTGTTTCTGGCATCGCTATTTTTGCTTTTCTGCTTTTCTG
GCCATCCTCGCAAGTTTGTGTTGTTATACTGTCTGCCATTTTTGTTGTTGTTCATTTCCTCTTCCAGCGCGATGGTTTTA
TTCGGAAAAGGGGAGACGACGTGGTTTCATTATGGGCTGATCCATATAACGGAGGAAAGCTTTTACCGGGGCATCCATTT
AGGTTTACGTGCGTCTACATTCGCCGTGCTTGGTCTATTGTTTGCTTTAACAACAAAACCTGTGCTGCTGTTTTATTCGC
TCATGCAGCAACTAAAACTTCCGGCAAACATAGCCTATTCGTTTATGGCTTCGATTCGAATGCTGCCTATTATGGTAAGC
GAGTTTCAAACGCTTCACTATGCGTACCGCATAAGAGGCCTTGATCTTGGAAAAGGCGCAACAGGCTTTTTAAAGAAAAT
GCGTTTTTTTAGTGTTCCATTATTGGCGCAGGCCATACGGCGTGCGCAACGGATCGCGATTGCTATGGAGGCTAAACAGT
TTAACGCGGCAGCGAAACGAACGTATTTTTATAAAATCGGCTACTCAAAATGGGATGTCCTTTTCCTTACTACATGCCTT
GCGTTCGTAAGCGCAAGTGCCTTGCTTGGTGGGCTAGAATGGTTTTTGCCTGTAGGAGATGTACGTCACTATGAATAA

Upstream 100 bases:

>100_bases
ATGATTGTTGACCATTTTGCCACGCATGAATGGACGATTAAAAACGGAACCCTTGATACAATAATGGCGCGCACGCGAAA
TGGAACAGGGGGTGACGTAG

Downstream 100 bases:

>100_bases
CGGCCAATCTGTGCTTAAATAAAGGAGGATGACTGGAGAAAGGACTGTCACAATGGAACAACAAAAAGCGCTCGATCTGT
CTTTTTTTGAGCAATCAACA

Product: cobalt ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEYKWKETWLSRVNPSLKLVTTIIGFIAIIFVHNPNALLVLFLASLFLLFCFSGHPRKFVLLYCLPFLLLFISSSSAMVL
FGKGETTWFHYGLIHITEESFYRGIHLGLRASTFAVLGLLFALTTKPVLLFYSLMQQLKLPANIAYSFMASIRMLPIMVS
EFQTLHYAYRIRGLDLGKGATGFLKKMRFFSVPLLAQAIRRAQRIAIAMEAKQFNAAAKRTYFYKIGYSKWDVLFLTTCL
AFVSASALLGGLEWFLPVGDVRHYE

Sequences:

>Translated_265_residues
MEYKWKETWLSRVNPSLKLVTTIIGFIAIIFVHNPNALLVLFLASLFLLFCFSGHPRKFVLLYCLPFLLLFISSSSAMVL
FGKGETTWFHYGLIHITEESFYRGIHLGLRASTFAVLGLLFALTTKPVLLFYSLMQQLKLPANIAYSFMASIRMLPIMVS
EFQTLHYAYRIRGLDLGKGATGFLKKMRFFSVPLLAQAIRRAQRIAIAMEAKQFNAAAKRTYFYKIGYSKWDVLFLTTCL
AFVSASALLGGLEWFLPVGDVRHYE
>Mature_265_residues
MEYKWKETWLSRVNPSLKLVTTIIGFIAIIFVHNPNALLVLFLASLFLLFCFSGHPRKFVLLYCLPFLLLFISSSSAMVL
FGKGETTWFHYGLIHITEESFYRGIHLGLRASTFAVLGLLFALTTKPVLLFYSLMQQLKLPANIAYSFMASIRMLPIMVS
EFQTLHYAYRIRGLDLGKGATGFLKKMRFFSVPLLAQAIRRAQRIAIAMEAKQFNAAAKRTYFYKIGYSKWDVLFLTTCL
AFVSASALLGGLEWFLPVGDVRHYE

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30231; Mature: 30231

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYKWKETWLSRVNPSLKLVTTIIGFIAIIFVHNPNALLVLFLASLFLLFCFSGHPRKFV
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCHHHH
LLYCLPFLLLFISSSSAMVLFGKGETTWFHYGLIHITEESFYRGIHLGLRASTFAVLGLL
HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
FALTTKPVLLFYSLMQQLKLPANIAYSFMASIRMLPIMVSEFQTLHYAYRIRGLDLGKGA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCH
TGFLKKMRFFSVPLLAQAIRRAQRIAIAMEAKQFNAAAKRTYFYKIGYSKWDVLFLTTCL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHH
AFVSASALLGGLEWFLPVGDVRHYE
HHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEYKWKETWLSRVNPSLKLVTTIIGFIAIIFVHNPNALLVLFLASLFLLFCFSGHPRKFV
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCHHHH
LLYCLPFLLLFISSSSAMVLFGKGETTWFHYGLIHITEESFYRGIHLGLRASTFAVLGLL
HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
FALTTKPVLLFYSLMQQLKLPANIAYSFMASIRMLPIMVSEFQTLHYAYRIRGLDLGKGA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCH
TGFLKKMRFFSVPLLAQAIRRAQRIAIAMEAKQFNAAAKRTYFYKIGYSKWDVLFLTTCL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHH
AFVSASALLGGLEWFLPVGDVRHYE
HHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]