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The map label for this gene is ripX [H]

Identifier: 56963547

GI number: 56963547

Start: 1901056

End: 1901949

Strand: Direct

Name: ripX [H]

Synonym: ABC1782

Alternate gene names: 56963547

Gene position: 1901056-1901949 (Clockwise)

Preceding gene: 56963546

Following gene: 56963548

Centisome position: 44.17

GC content: 45.53

Gene sequence:

>894_bases
ATGGCAATGGAACACGATATTCAAGAGTTTATCCATTTTATTAAAGTAGAAAAAGGGCTGTCGCCAAATACAATTGAGTC
GTATGCTAGGGACTTAAAGCAATATGGCGCCTATTTAAAGAAACGAGGGATCGATCAATTTGCCAAAGTGGACAGGTCGA
CGTTGCAGCATTATTTATTCACGCTAAAGGAAACAGGCAAGTCTTCAGCGACGATTGCAAGGAACGTCACAACGCTTCGA
GCGTTGCATCAGTTTTTGTACCGTGAAAAATGGACAGACCATGACCCGACATTATGGATCGAGACGCCGCGCATTGATAA
AAAACTGCCAGGTGTCCTTTCCATTGAGGAAGTGGATGCACTGCTAGCTGCACCAGATTCATCTACGCCGTTTGGTGTGC
GCAATAAAGCGATGCTAGAGCTTCTCTATGCATCTGGGATGCGTGTCACAGAATTGATTTCTCTTGGGCTTGATGACGTC
CACTTGTCCATGGGGTTTGTCCGTGTCATCGGCAAAGGGAATAAAGAGCGGATCGTGCCTTTGGGCAAAGAAGCGACCAA
AGCGTTAAACACCTATTTAGAGCGGGGCAGGGGTGCGTTGCTTAAGCATGAACGGCATGATAAATTGTTTGTCAATCACC
ATGGCCGCCCCATTAGCAGGCAAGGGTTTTGGAAAATCATGAAGCAACTAGCAAAAACGGCGAACATAGAAAAAGATTTT
AGCCCACATACGCTTCGCCATTCTTTTGCAACGCATTTGCTTGAAAATGGGGCTGACTTGCGTTCTGTCCAAGAAATGCT
CGGCCATGCCGATTTATCGACAACCCAAATATATACACATGTAACTAAAACGCGCATGAAAGATGTTTATTCTCGCTACC
ATCCTCGCGCTTAA

Upstream 100 bases:

>100_bases
TAATGAGCATGAATGTTGGCGAATCAGACTTATCAATCGACGAGCGGATAAAAAGGTTCTTATGGATGGGAGAATAAGCG
GTTAAAGGAGCAAATTCCTC

Downstream 100 bases:

>100_bases
GCCTGAATGGAAATTATTGTGATATCCGAGATAATGGGCAAGAGCAGATGGGAAGCTAAAGGTTGAATACAGTCGAGAGA
AGGGAAATTATGAAGAAACG

Product: site-specific tyrosine recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAMEHDIQEFIHFIKVEKGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVTTLR
ALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDV
HLSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDF
SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA

Sequences:

>Translated_297_residues
MAMEHDIQEFIHFIKVEKGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVTTLR
ALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDV
HLSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDF
SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA
>Mature_296_residues
AMEHDIQEFIHFIKVEKGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVTTLRA
LHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDVH
LSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDFS
PHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=46.5753424657534, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=33.2191780821918, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1790767, Length=195, Percent_Identity=27.6923076923077, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790768, Length=181, Percent_Identity=29.2817679558011, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34000; Mature: 33868

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMEHDIQEFIHFIKVEKGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLF
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TLKETGKSSATIARNVTTLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEHHHHHH
LLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKERIVP
HHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
LGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDF
CCHHHHHHHHHHHHHCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AMEHDIQEFIHFIKVEKGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLF
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TLKETGKSSATIARNVTTLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEHHHHHH
LLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKERIVP
HHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
LGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDF
CCHHHHHHHHHHHHHCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]