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The map label for this gene is yqxH [H]

Identifier: 56963122

GI number: 56963122

Start: 1476507

End: 1476920

Strand: Direct

Name: yqxH [H]

Synonym: ABC1350

Alternate gene names: 56963122

Gene position: 1476507-1476920 (Clockwise)

Preceding gene: 56963121

Following gene: 56963123

Centisome position: 34.31

GC content: 38.65

Gene sequence:

>414_bases
GTGGAACAAATATCTTTCTTTTTAAACTTTCAAAACTTAGAGGTAGCAAAGCTATATTTGTTCGGCCCTGTTAAGTTTTT
AGATTTGTTGATTGTATTAATGGTAATCGACATTATCACTGGTGTTATGAAAGCAGTTAAGCTAAAAGACTTGCGCAGTC
GGTCAGCCCTTTTTGGTTATGCGCGGAAGATCGCCATATTTGGCATTATAATTGTCGCGAATATCGTGGACAGAATACTA
GACCTAAACGGCATGGTTGCAACAACAACTGTGCTTTTTTACATTGCGAATGAAGCCCTGTCAATTGTAGAAAACGCAAG
CAGAATTGGGCTGAAAGTTCCGCCAGTAATTATGGAAAAACTACGTGGCTTTGATGAACACGGCCCTGAAGAAAATAAAA
AGGAGAGTGAATAA

Upstream 100 bases:

>100_bases
TCAAAAAGTTGATGATATTGACCGAAGGCTAAAAGCATTAGAAGGAAACCAAGGAACCGTATAGGTTCTTTTTTATTTCA
AATGAAAAGGTTGTGTAGAC

Downstream 100 bases:

>100_bases
GCATGAAAATCGTACAAGATTTAATCAGCAAATCAGCGTCTAACCGTCCTGGTGATCGCCTTAACCCAACCCATATTACT
GTCCATGAGACGGGGAATAC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MEQISFFLNFQNLEVAKLYLFGPVKFLDLLIVLMVIDIITGVMKAVKLKDLRSRSALFGYARKIAIFGIIIVANIVDRIL
DLNGMVATTTVLFYIANEALSIVENASRIGLKVPPVIMEKLRGFDEHGPEENKKESE

Sequences:

>Translated_137_residues
MEQISFFLNFQNLEVAKLYLFGPVKFLDLLIVLMVIDIITGVMKAVKLKDLRSRSALFGYARKIAIFGIIIVANIVDRIL
DLNGMVATTTVLFYIANEALSIVENASRIGLKVPPVIMEKLRGFDEHGPEENKKESE
>Mature_137_residues
MEQISFFLNFQNLEVAKLYLFGPVKFLDLLIVLMVIDIITGVMKAVKLKDLRSRSALFGYARKIAIFGIIIVANIVDRIL
DLNGMVATTTVLFYIANEALSIVENASRIGLKVPPVIMEKLRGFDEHGPEENKKESE

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 15387; Mature: 15387

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQISFFLNFQNLEVAKLYLFGPVKFLDLLIVLMVIDIITGVMKAVKLKDLRSRSALFGY
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARKIAIFGIIIVANIVDRILDLNGMVATTTVLFYIANEALSIVENASRIGLKVPPVIMEK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LRGFDEHGPEENKKESE
HCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEQISFFLNFQNLEVAKLYLFGPVKFLDLLIVLMVIDIITGVMKAVKLKDLRSRSALFGY
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARKIAIFGIIIVANIVDRILDLNGMVATTTVLFYIANEALSIVENASRIGLKVPPVIMEK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LRGFDEHGPEENKKESE
HCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1683402; 7704261; 8969508; 9384377 [H]