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The map label for this gene is xerC [H]

Identifier: 56963097

GI number: 56963097

Start: 1451053

End: 1452018

Strand: Direct

Name: xerC [H]

Synonym: ABC1325

Alternate gene names: 56963097

Gene position: 1451053-1452018 (Clockwise)

Preceding gene: 56963096

Following gene: 56963098

Centisome position: 33.72

GC content: 36.23

Gene sequence:

>966_bases
TTGGCGCAAAAAAGAAGGAGCAATAGTATCAATTACACTACTGATCAGTTTACAATCGCAAAAGAAGATTTAACTTTCGA
AAAGGCAGTTGAGTTATTTATTCGAGATGTAAAACTGAAAAATAGGGCTGACGCTACAGTAACATTTTATAAAAACGAGC
TTAAAGGATTTAAACGTACTCTCAAAGAGATGAACTTGCCTATTGAACCAGCAAAAGTGACTCCATTTATGATAGAAGAA
TTTGCTTTTCATATGATGGAAGAAGGATCTAAAGCTGGTGCTGTTAATGCTCGATTACGTGCTGTTCGTGCCCTATTTAA
CTTTCTTTTTAAAAAACGCCTAATCCCAGAAAATCCAGTTGCTGATTTAAAGCTATTAAAAAATATTAAGGGTGACATCA
TCCCTTTTAGTAAAGATCAATTACAACGTTTGTTTAATCAAGCCGACAGACGTACATTTACTGGGTTAAGAAATTATGTC
ATGATGATGGTCATGTTAGACACAGGTGTCCGGGTAAAAGAACTTTGTCAGATTGATATGGTAGATGTATTATGGGATGA
TAACTCGATTGTCATAAGGCATCCTAAAAATGGTTATGTTCGTAGGGTACCGATTTCAGAGGAAACCATTAAGGCACTAG
AACAATACGTAAATCATAGAGGTCAAAACATAGGTAACAATGCCCTTTTCGTAACCCTAGACGATAAACGTATTTCAAAA
AGGCAAGTCCAGAATTTCTTATCTCAATATGGCAAGGGAGCTTCAATTACAGATGTGAGATGCTCCCCACATACGTTTAG
ACATACATTTGCTAAAATGGCATTACAGGGTGGAGCTAACATGTTTGAGCTTCAACAAATTCTCGGACATAGTTCATTAG
AAATGGTTCGTGTATATGTTCATTTGTTCTCTAATGAGATTGGTAGGAGTCATCGTGGATTCTCCCCTGTAAAGCAATTA
AAGTAG

Upstream 100 bases:

>100_bases
AGAGGTCGTTTTTCTTTTTTGCATACGCACTATTCGCCCTTAAAAATCGTGTGCATTGAATCGTGGCGCATCGTAAATTA
CCTTTTAGGAGGCTTACGAA

Downstream 100 bases:

>100_bases
TTTTTTTAGCTCTGTTCTTAATTGGACAGGGCTTTTTTTATTTGGGAAAGAAAAAAGACAAAGAAAAGAACAAAAAAAGA
TCAAGAATGGAACAATCATT

Product: phage-related integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MAQKRRSNSINYTTDQFTIAKEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEE
FAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRLFNQADRRTFTGLRNYV
MMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISK
RQVQNFLSQYGKGASITDVRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIGRSHRGFSPVKQL
K

Sequences:

>Translated_321_residues
MAQKRRSNSINYTTDQFTIAKEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEE
FAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRLFNQADRRTFTGLRNYV
MMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISK
RQVQNFLSQYGKGASITDVRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIGRSHRGFSPVKQL
K
>Mature_320_residues
AQKRRSNSINYTTDQFTIAKEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEEF
AFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRLFNQADRRTFTGLRNYVM
MMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISKR
QVQNFLSQYGKGASITDVRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIGRSHRGFSPVKQLK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=304, Percent_Identity=27.6315789473684, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790244, Length=227, Percent_Identity=26.431718061674, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37094; Mature: 36962

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKRRSNSINYTTDQFTIAKEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRT
CCCCCCCCCCCEECCEEEEEHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
LKEMNLPIEPAKVTPFMIEEFAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPV
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
ADLKLLKNIKGDIIPFSKDQLQRLFNQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDM
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VDVLWDDNSIVIRHPKNGYVRRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISK
EEEEECCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
RQVQNFLSQYGKGASITDVRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYV
HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
HLFSNEIGRSHRGFSPVKQLK
HHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure 
AQKRRSNSINYTTDQFTIAKEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRT
CCCCCCCCCCEECCEEEEEHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
LKEMNLPIEPAKVTPFMIEEFAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPV
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
ADLKLLKNIKGDIIPFSKDQLQRLFNQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDM
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VDVLWDDNSIVIRHPKNGYVRRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISK
EEEEECCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
RQVQNFLSQYGKGASITDVRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYV
HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
HLFSNEIGRSHRGFSPVKQLK
HHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA