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The map label for this gene is sufD [H]

Identifier: 55981809

GI number: 55981809

Start: 1724889

End: 1726184

Strand: Direct

Name: sufD [H]

Synonym: TTHA1840

Alternate gene names: 55981809

Gene position: 1724889-1726184 (Clockwise)

Preceding gene: 55981808

Following gene: 55981810

Centisome position: 93.25

GC content: 68.21

Gene sequence:

>1296_bases
ATGCAGGTACTGGACAAGACGCAGGTGGAGGCCGTCTCCAAGGCCCTGGGCGAGCCCGCGTGGCTCCTGGAGAAGAGGCT
CAAGGCCCTCGAGGCCTTCGCCCGGCTCCCTTACCCCAGCAAGAAGGACGAGAACTGGCGGTACACCGACCTCTCCGAAG
CCCCCCTGGAGCTTCCCGTGGAGGCCCCCAAGGGGCTAAGGCTTTCCCGGGACGACCTCCCCGAGCCCGTGAAGCGCCGC
CTGGAGCGGACGGACGTCTCGGGCTTCCTGGTCTTCGTGGGGCCGGACCTCGTCTACGCCGAGGTGCCCGAGGCGCTAAA
GGAGAAGGGCCTCGTCTTCACCTCCCTGGCCGAGGCCCTGAAGACCCACCCCGACAAGGTGGAGGCGGCCCTCTTCCAGG
CGGTCTACACCGAGGACAAGTTCGCCGCACAGAACAGCGCCTTCTTCACCCACGGGGCCTTCCTCTACGTGCCCGCGGGG
CTGGAGGTGGAGAAGCCCCTCGGGGTCTTCAAGGTGCTCCTGGAGGGGGAAAAGGCCTCGGCGGGGCGGAGCCTCCTCTT
CCTGGAGGACAACGCCAAGGCCGCCTACATTGAGGAGTACCTCTCCTTGGACCTCCCCCCCACCCTGCACCTCTCCGCCA
CGGAGATGGTCCTGAGGCCCGGGGCCCGCCTGCGCCACGCCCACGTCCAGACCTTCGGCGAGGGGGTGTGGCACTTCCAC
CGGCAAAGGGCCCTCTTAGAGCGGGACAGCGGCCTCAACGACCTCGTGGTGAACCTCGGGGGCGCCTACGCCCGGAGCGA
GGTGGCCTCGGAGCTCGTGGGTCCGGGGGCGGAGAGCGAGATGCTCGGCCTCTACTTCGGGCACGGGAGGCAGCAGTTTG
ACCACTACACCCTGCAGCACCACGTGGAGCACCACACCCGCTCGGACCTCCTCTACAAGGGGGCGGTGAAGGACGAAGCC
CGGGCGGTCTTCTCCGGCCTCATCCGGCTGGAAAAGGGCGCCCAGAAGACGGACGCCTACCAGGCGAACCGCAACCTCCT
CCTCTCCCCCACGGCCCGGGTGGACTCCATCCCCCAGCTGGAGATCGGGGCCAACGACGTGCGCTGCACCCACGGGAGCA
CCACCGCCCCCGTGGACGAGATGCAGCTCTTCTACCTCCAGTCCCGGGGGCTTCCTCGAGGCCTCGCCCAGGAGCTCCTG
GTCAAGGCCCACCTCGCGGACGTCCTCTCCCGCATCCCCTTGAAGGCGCTTAGGGCCCACATTGAGGCGGTGATTGAGGA
GAAGGTGCGGATCTAG

Upstream 100 bases:

>100_bases
GAGCTCAACAAGCTCATTGAGCTGGAGATGGAGGGCTCCGTCGGCTAAAGGCCGAGCCTTGGGGGAGGCCCTGGGCCTCC
CCCTTTTTTCGGGAGGAAGC

Downstream 100 bases:

>100_bases
CCATGTGGACCCCCGTGGCCAAGCTCGGCGAGTTCCAAAACGGCCGCCTCGTGGTGAAGCGGCCTGAGCACAGGAAGCCC
ATCCTCCTCCTCTACACGGG

Product: SufD protein membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MQVLDKTQVEAVSKALGEPAWLLEKRLKALEAFARLPYPSKKDENWRYTDLSEAPLELPVEAPKGLRLSRDDLPEPVKRR
LERTDVSGFLVFVGPDLVYAEVPEALKEKGLVFTSLAEALKTHPDKVEAALFQAVYTEDKFAAQNSAFFTHGAFLYVPAG
LEVEKPLGVFKVLLEGEKASAGRSLLFLEDNAKAAYIEEYLSLDLPPTLHLSATEMVLRPGARLRHAHVQTFGEGVWHFH
RQRALLERDSGLNDLVVNLGGAYARSEVASELVGPGAESEMLGLYFGHGRQQFDHYTLQHHVEHHTRSDLLYKGAVKDEA
RAVFSGLIRLEKGAQKTDAYQANRNLLLSPTARVDSIPQLEIGANDVRCTHGSTTAPVDEMQLFYLQSRGLPRGLAQELL
VKAHLADVLSRIPLKALRAHIEAVIEEKVRI

Sequences:

>Translated_431_residues
MQVLDKTQVEAVSKALGEPAWLLEKRLKALEAFARLPYPSKKDENWRYTDLSEAPLELPVEAPKGLRLSRDDLPEPVKRR
LERTDVSGFLVFVGPDLVYAEVPEALKEKGLVFTSLAEALKTHPDKVEAALFQAVYTEDKFAAQNSAFFTHGAFLYVPAG
LEVEKPLGVFKVLLEGEKASAGRSLLFLEDNAKAAYIEEYLSLDLPPTLHLSATEMVLRPGARLRHAHVQTFGEGVWHFH
RQRALLERDSGLNDLVVNLGGAYARSEVASELVGPGAESEMLGLYFGHGRQQFDHYTLQHHVEHHTRSDLLYKGAVKDEA
RAVFSGLIRLEKGAQKTDAYQANRNLLLSPTARVDSIPQLEIGANDVRCTHGSTTAPVDEMQLFYLQSRGLPRGLAQELL
VKAHLADVLSRIPLKALRAHIEAVIEEKVRI
>Mature_431_residues
MQVLDKTQVEAVSKALGEPAWLLEKRLKALEAFARLPYPSKKDENWRYTDLSEAPLELPVEAPKGLRLSRDDLPEPVKRR
LERTDVSGFLVFVGPDLVYAEVPEALKEKGLVFTSLAEALKTHPDKVEAALFQAVYTEDKFAAQNSAFFTHGAFLYVPAG
LEVEKPLGVFKVLLEGEKASAGRSLLFLEDNAKAAYIEEYLSLDLPPTLHLSATEMVLRPGARLRHAHVQTFGEGVWHFH
RQRALLERDSGLNDLVVNLGGAYARSEVASELVGPGAESEMLGLYFGHGRQQFDHYTLQHHVEHHTRSDLLYKGAVKDEA
RAVFSGLIRLEKGAQKTDAYQANRNLLLSPTARVDSIPQLEIGANDVRCTHGSTTAPVDEMQLFYLQSRGLPRGLAQELL
VKAHLADVLSRIPLKALRAHIEAVIEEKVRI

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=401, Percent_Identity=29.1770573566085, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081955, Length=448, Percent_Identity=24.7767857142857, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47944; Mature: 47944

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLDKTQVEAVSKALGEPAWLLEKRLKALEAFARLPYPSKKDENWRYTDLSEAPLELPV
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EAPKGLRLSRDDLPEPVKRRLERTDVSGFLVFVGPDLVYAEVPEALKEKGLVFTSLAEAL
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
KTHPDKVEAALFQAVYTEDKFAAQNSAFFTHGAFLYVPAGLEVEKPLGVFKVLLEGEKAS
HCCCHHHHHHHHHHHHHCHHHHCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHCCCCCC
AGRSLLFLEDNAKAAYIEEYLSLDLPPTLHLSATEMVLRPGARLRHAHVQTFGEGVWHFH
CCCEEEEEECCCCHHHHHHHHHCCCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RQRALLERDSGLNDLVVNLGGAYARSEVASELVGPGAESEMLGLYFGHGRQQFDHYTLQH
HHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHH
HVEHHTRSDLLYKGAVKDEARAVFSGLIRLEKGAQKTDAYQANRNLLLSPTARVDSIPQL
HHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCE
EIGANDVRCTHGSTTAPVDEMQLFYLQSRGLPRGLAQELLVKAHLADVLSRIPLKALRAH
EECCCCEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IEAVIEEKVRI
HHHHHHHHHCC
>Mature Secondary Structure
MQVLDKTQVEAVSKALGEPAWLLEKRLKALEAFARLPYPSKKDENWRYTDLSEAPLELPV
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EAPKGLRLSRDDLPEPVKRRLERTDVSGFLVFVGPDLVYAEVPEALKEKGLVFTSLAEAL
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
KTHPDKVEAALFQAVYTEDKFAAQNSAFFTHGAFLYVPAGLEVEKPLGVFKVLLEGEKAS
HCCCHHHHHHHHHHHHHCHHHHCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHCCCCCC
AGRSLLFLEDNAKAAYIEEYLSLDLPPTLHLSATEMVLRPGARLRHAHVQTFGEGVWHFH
CCCEEEEEECCCCHHHHHHHHHCCCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RQRALLERDSGLNDLVVNLGGAYARSEVASELVGPGAESEMLGLYFGHGRQQFDHYTLQH
HHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHH
HVEHHTRSDLLYKGAVKDEARAVFSGLIRLEKGAQKTDAYQANRNLLLSPTARVDSIPQL
HHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCE
EIGANDVRCTHGSTTAPVDEMQLFYLQSRGLPRGLAQELLVKAHLADVLSRIPLKALRAH
EECCCCEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IEAVIEEKVRI
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]