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The map label for this gene is ydaM [H]

Identifier: 55981610

GI number: 55981610

Start: 1555814

End: 1556896

Strand: Direct

Name: ydaM [H]

Synonym: TTHA1641

Alternate gene names: 55981610

Gene position: 1555814-1556896 (Clockwise)

Preceding gene: 55981609

Following gene: 55981612

Centisome position: 84.11

GC content: 68.05

Gene sequence:

>1083_bases
ATGGCCTCCTTGAAGGGCCGTTATACTGGTCTTAACTTGTCCCCCACCCTGGAGCTCCTGGACCCCTTGAACCCGGTGCG
GCGGCAGATGGCCCTTTGGCTCCTGCCCCTGGGAAGCCTCCTGGCGGGGGCGGCCTACTGGGCCTCGAGGCCAGGGGGCC
TGGACCCCGTGGACCGGATCTTCCTGCCCCCAATGGCCCTAGGCTTTCTCGCCTTCGCCGCCCTCCTATGGCGCTTTCCC
ACCTCGGCCCGGTGGGTCATCCCCGGCGCCCACGCCCTCATCGCCTTGTACCTCCTTTCCACCCTGACCTACCAGCTCCT
CTTCAAGCCTAACCCCTTGGGTCTCTCCCCCGCCGCCTACTGGGTGCCCTTCTTTTACTTCTCCAGCTACCTTTTCTTCC
CCGCCAAGAGGGCAGCGCGCCTGGCCCTCCTCTACCTCCTCACCCTCTTTCCCGTGGCCCTTCTGGGCCTCATGCGCAAC
CCCTTCCAGCCCGTCCACTGGAACGCCCTGACCCAGTTCTTCGGGGCCAACCTGGCCTACGTGGGCCTGCTCTACCTGCT
GGTGCGCCTGAAGGAAGGGTACATGGAGGCCCAACTGGACGCCTACACCGACTTTCTCACCGGGCTCAGAAACCGCCGCT
ATCTAGAGCTCATTTTGGAAAGGGAGCTCTTCCGCCTGCAGCGCTACGGCCGCCCCCTTTCCCTCGTCCTCCTTGACCTG
GACGGCTTCAAGGCGGTGAACGACCTCCACGGGCACGAGGTGGGGGACCGGGTGCTCCAGGCCCTCGCCCAACGCATCGA
GGCCCACCTCCGGCGAAGCGACCGCGCCGTGCGCCTGGGCGGAGAGGAGTTCGCCCTTCTCCTCCCGGAAACCCCCCTCC
CCCAGGCCCTGCGCCTGGCGGAGCGCCTGCGGCGGGCGGTGGAGGCCATGGCGGTGCCCCCCGTGGCGCGGATCACGGCG
AGCTTCGGCGTGGCCGAGGCGCGCCCCACCGACACCCCCCTCACCCTCCTCCGCCGGGCGGACGAGGCCATGTACCGGGC
CAAGCGCAAGGGGAAAAACCGGGTGGAGGCGGCCCCCAAATAA

Upstream 100 bases:

>100_bases
GCTACGCCCGGGAGCTTCAGGGGTACACCTACCTGGAGGACTAAGCCCCCGCCCTAACCCGTTAAGGCCCGGTTAAGGGG
GGGCGTGGCAGGATGGGGCC

Downstream 100 bases:

>100_bases
GTGCCCCACCGCGGCTTTCGCCGCGGTGGGGGCCCCAAAAGGGTCTTTCTAGACGCGCGGACGCTTACCCCCATGCTGGC
TTGCGCCAGCATGGGGTGGC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MASLKGRYTGLNLSPTLELLDPLNPVRRQMALWLLPLGSLLAGAAYWASRPGGLDPVDRIFLPPMALGFLAFAALLWRFP
TSARWVIPGAHALIALYLLSTLTYQLLFKPNPLGLSPAAYWVPFFYFSSYLFFPAKRAARLALLYLLTLFPVALLGLMRN
PFQPVHWNALTQFFGANLAYVGLLYLLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDL
DGFKAVNDLHGHEVGDRVLQALAQRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVEAMAVPPVARITA
SFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRVEAAPK

Sequences:

>Translated_360_residues
MASLKGRYTGLNLSPTLELLDPLNPVRRQMALWLLPLGSLLAGAAYWASRPGGLDPVDRIFLPPMALGFLAFAALLWRFP
TSARWVIPGAHALIALYLLSTLTYQLLFKPNPLGLSPAAYWVPFFYFSSYLFFPAKRAARLALLYLLTLFPVALLGLMRN
PFQPVHWNALTQFFGANLAYVGLLYLLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDL
DGFKAVNDLHGHEVGDRVLQALAQRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVEAMAVPPVARITA
SFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRVEAAPK
>Mature_359_residues
ASLKGRYTGLNLSPTLELLDPLNPVRRQMALWLLPLGSLLAGAAYWASRPGGLDPVDRIFLPPMALGFLAFAALLWRFPT
SARWVIPGAHALIALYLLSTLTYQLLFKPNPLGLSPAAYWVPFFYFSSYLFFPAKRAARLALLYLLTLFPVALLGLMRNP
FQPVHWNALTQFFGANLAYVGLLYLLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLD
GFKAVNDLHGHEVGDRVLQALAQRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVEAMAVPPVARITAS
FGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRVEAAPK

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=45.1807228915663, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=35.0574712643678, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=40.7643312101911, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=41.1764705882353, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=32.9192546583851, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=36.1963190184049, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787816, Length=210, Percent_Identity=32.3809523809524, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=33.5294117647059, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788381, Length=197, Percent_Identity=33.502538071066, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=34.1040462427746, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=158, Percent_Identity=29.746835443038, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 40562; Mature: 40431

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLKGRYTGLNLSPTLELLDPLNPVRRQMALWLLPLGSLLAGAAYWASRPGGLDPVDRI
CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
FLPPMALGFLAFAALLWRFPTSARWVIPGAHALIALYLLSTLTYQLLFKPNPLGLSPAAY
HCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
WVPFFYFSSYLFFPAKRAARLALLYLLTLFPVALLGLMRNPFQPVHWNALTQFFGANLAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
VGLLYLLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
DGFKAVNDLHGHEVGDRVLQALAQRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLA
CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHH
ERLRRAVEAMAVPPVARITASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRVEAAPK
HHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ASLKGRYTGLNLSPTLELLDPLNPVRRQMALWLLPLGSLLAGAAYWASRPGGLDPVDRI
CCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
FLPPMALGFLAFAALLWRFPTSARWVIPGAHALIALYLLSTLTYQLLFKPNPLGLSPAAY
HCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
WVPFFYFSSYLFFPAKRAARLALLYLLTLFPVALLGLMRNPFQPVHWNALTQFFGANLAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
VGLLYLLVRLKEGYMEAQLDAYTDFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
DGFKAVNDLHGHEVGDRVLQALAQRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLA
CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHH
ERLRRAVEAMAVPPVARITASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRVEAAPK
HHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]