Click here to switch to the map view.

The map label for this gene is 55981379

Identifier: 55981379

GI number: 55981379

Start: 1341405

End: 1341962

Strand: Reverse

Name: 55981379

Synonym: TTHA1410

Alternate gene names: NA

Gene position: 1341962-1341405 (Counterclockwise)

Preceding gene: 55981380

Following gene: 55981378

Centisome position: 72.55

GC content: 68.82

Gene sequence:

>558_bases
ATGTTTAGGCGCGCCCTCGCCTGGGGGGCCCTCCTCGCCGCCTTGGGCCTCGCCTTGGCCGCGCGTTACGGCCTGGGCAC
GCCCATCTCCGAGGAGCTCGCCCGCCAGTACGACCTTAGGCCCGTGGTCCTGCCCGACGGCCGCGGCCTTCCCCCCGGGG
AGGGGAGGGTGGAGGAGGGCCAAAGGATCTACGCCCAGAAGTGCGCTTCCTGCCACGGGGAGAACGGGGAGGGGTATCCC
TTCAACCGCCTGGTCTCCGAGCCTTTCCCCATCACCCCGGACACGGAGCCCGTGGAGTACGCCATCGGCAACTACTGGCC
CTACGCCACCACGCTCTTTGACTACATCCGCCGGGCCATGCCCTTTGGCCAGGGTGGGACGCTGACGGACGAGGAGGTCT
ACCACCTCGTGGCCTTCCTCCTCTACATGAACGGGATCGTTGACGCCGGCACCCCCGTGAACCAGAAGACCCTCCCCCAG
ATCCGGATGCCCGCCCGGGAGCTTCTGGAGCTGGACCCCGAGGCCAAGCGCCGCTTCCCCTGGCTCACCCTGCCTTAG

Upstream 100 bases:

>100_bases
ATCCTGCCGGACGGCAGGGTGGTGAACGGCGACCGCCCCCTGGGCCAAGGGGCCTTCGGCCCGGTCGGCCCCGTGGGGGG
GTGCGGTGGGGAGGTGTTGG

Downstream 100 bases:

>100_bases
GATGGGGGTATGTCGCTTTCCTTGACGGCGGCCTTTTTAGCGGGGGTGCTCTCCTTCCTCTCCCCCTGCGTCTTGCCCCT
CGTCCCCACCTACCTCTTCT

Product: sulfite dehydrogenase cytochrome subunit SoxD

Products: NA

Alternate protein names: Sulfite Oxidase Cytochrome Subunit; Diheme Cytochrome C SoxD; Cytochrome; Cytochrome C; Cytochrome C Subfamily; Cytochrome C-Type; Sulfite Oxidase Cytochrome Subunit SoxD; C-Type Cytochrome; Mo-Co Oxidoreductase Dimerization Domain Protein; Sulfite Oxidase Cytochrome C Subunit SoxD; Sulfur Oxidation Protein SoxCD Diheme Cytochrome C Subunit; Sulfite Dehydrogenase Cytochrome Subunit SoxD; Sulfur Oxidation Protein Cytochrome C Subunit; Cytochrome C Region Protein

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MFRRALAWGALLAALGLALAARYGLGTPISEELARQYDLRPVVLPDGRGLPPGEGRVEEGQRIYAQKCASCHGENGEGYP
FNRLVSEPFPITPDTEPVEYAIGNYWPYATTLFDYIRRAMPFGQGGTLTDEEVYHLVAFLLYMNGIVDAGTPVNQKTLPQ
IRMPARELLELDPEAKRRFPWLTLP

Sequences:

>Translated_185_residues
MFRRALAWGALLAALGLALAARYGLGTPISEELARQYDLRPVVLPDGRGLPPGEGRVEEGQRIYAQKCASCHGENGEGYP
FNRLVSEPFPITPDTEPVEYAIGNYWPYATTLFDYIRRAMPFGQGGTLTDEEVYHLVAFLLYMNGIVDAGTPVNQKTLPQ
IRMPARELLELDPEAKRRFPWLTLP
>Mature_185_residues
MFRRALAWGALLAALGLALAARYGLGTPISEELARQYDLRPVVLPDGRGLPPGEGRVEEGQRIYAQKCASCHGENGEGYP
FNRLVSEPFPITPDTEPVEYAIGNYWPYATTLFDYIRRAMPFGQGGTLTDEEVYHLVAFLLYMNGIVDAGTPVNQKTLPQ
IRMPARELLELDPEAKRRFPWLTLP

Specific function: Unknown

COG id: COG3258

COG function: function code C; Cytochrome c

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20667; Mature: 20667

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRRALAWGALLAALGLALAARYGLGTPISEELARQYDLRPVVLPDGRGLPPGEGRVEEG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHH
QRIYAQKCASCHGENGEGYPFNRLVSEPFPITPDTEPVEYAIGNYWPYATTLFDYIRRAM
HHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHC
PFGQGGTLTDEEVYHLVAFLLYMNGIVDAGTPVNQKTLPQIRMPARELLELDPEAKRRFP
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHCCHHHHHCCC
WLTLP
CCCCC
>Mature Secondary Structure
MFRRALAWGALLAALGLALAARYGLGTPISEELARQYDLRPVVLPDGRGLPPGEGRVEEG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHH
QRIYAQKCASCHGENGEGYPFNRLVSEPFPITPDTEPVEYAIGNYWPYATTLFDYIRRAM
HHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHC
PFGQGGTLTDEEVYHLVAFLLYMNGIVDAGTPVNQKTLPQIRMPARELLELDPEAKRRFP
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHCCHHHHHCCC
WLTLP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA