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The map label for this gene is ccmH [H]

Identifier: 55981371

GI number: 55981371

Start: 1335310

End: 1335729

Strand: Reverse

Name: ccmH [H]

Synonym: TTHA1402

Alternate gene names: 55981371

Gene position: 1335729-1335310 (Counterclockwise)

Preceding gene: 55981372

Following gene: 55981370

Centisome position: 72.21

GC content: 67.86

Gene sequence:

>420_bases
ATGAGGTGGGTTGTTCTGCTCATGGCCTTTCTTCTTCCCGCCCTGGCCCAGGAAGCGCCGCCCCCAGACCTTCCCCCGGA
GGTCTTCCGCATCGCCCGGGAGCTCCGCTGCCCCGTCTGCCAGGGGGAGTCGGCGGCGGAGAGCAACTCGGGGGTGGCGG
TGGAGATGCGCCGGATCATCGCCGAGATGCTTCAGGAGGGGAAGACGGAGGAGGAGATCAAGGCCTTCTTCGTGGAGCGG
TACGGGGAGTGGATCCTCTACGCGCCCCCGAGGCGGGGGGTGACCCTTTGGGTCTGGGTGCTCCCCGTCTTGGGGCTTCT
CCTCCTCGGCCTCGGCCTCTTCGCCTACTTCCGGCCCAAGCCGCTTCCCAAGGAGCTCTTGGAGGAGGCGGAGCGCCGCC
TTAAGGAGCCCCCGAGATGA

Upstream 100 bases:

>100_bases
CCGAGACCTTCTTCATTGACCGGGAGGGCCGGGTCCTCGCGCGGCACGCCGGGGCCATTGACGAGGCCACCCTGGCGCGT
TACCTGGAGGAGGCGTTGCG

Downstream 100 bases:

>100_bases
TGGCCACCCTGTTCTTCCTCGCCCTCTTTCTCCTCGGCCTCCTCCTCGCCCTAAGGCCCCTCCTCGGCCCCAAGGAGCCC
TTCCCCGAGCCCCCAAGGCG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRWVVLLMAFLLPALAQEAPPPDLPPEVFRIARELRCPVCQGESAAESNSGVAVEMRRIIAEMLQEGKTEEEIKAFFVER
YGEWILYAPPRRGVTLWVWVLPVLGLLLLGLGLFAYFRPKPLPKELLEEAERRLKEPPR

Sequences:

>Translated_139_residues
MRWVVLLMAFLLPALAQEAPPPDLPPEVFRIARELRCPVCQGESAAESNSGVAVEMRRIIAEMLQEGKTEEEIKAFFVER
YGEWILYAPPRRGVTLWVWVLPVLGLLLLGLGLFAYFRPKPLPKELLEEAERRLKEPPR
>Mature_139_residues
MRWVVLLMAFLLPALAQEAPPPDLPPEVFRIARELRCPVCQGESAAESNSGVAVEMRRIIAEMLQEGKTEEEIKAFFVER
YGEWILYAPPRRGVTLWVWVLPVLGLLLLGLGLFAYFRPKPLPKELLEEAERRLKEPPR

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=109, Percent_Identity=36.697247706422, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1790512, Length=74, Percent_Identity=44.5945945945946, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15922; Mature: 15922

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWVVLLMAFLLPALAQEAPPPDLPPEVFRIARELRCPVCQGESAAESNSGVAVEMRRII
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
AEMLQEGKTEEEIKAFFVERYGEWILYAPPRRGVTLWVWVLPVLGLLLLGLGLFAYFRPK
HHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLPKELLEEAERRLKEPPR
CCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRWVVLLMAFLLPALAQEAPPPDLPPEVFRIARELRCPVCQGESAAESNSGVAVEMRRII
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
AEMLQEGKTEEEIKAFFVERYGEWILYAPPRRGVTLWVWVLPVLGLLLLGLGLFAYFRPK
HHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLPKELLEEAERRLKEPPR
CCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]