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The map label for this gene is rimM [H]

Identifier: 55981002

GI number: 55981002

Start: 981948

End: 982436

Strand: Reverse

Name: rimM [H]

Synonym: TTHA1033

Alternate gene names: 55981002

Gene position: 982436-981948 (Counterclockwise)

Preceding gene: 55981003

Following gene: 55981001

Centisome position: 53.11

GC content: 70.55

Gene sequence:

>489_bases
ATGCGCCTGGTGGAGATCGGCCGGTTCGGCGCCCCTTACGCCCTGAAAGGGGGCCTCAGGTTCCGGGGAGAGCCCGTGGT
GCTCCATTTGGAGCGGGTCTACGTGGAAGGCCACGGGTGGCGGGCCATTGAGGACCTCTACCGGGTGGGGGAGGAGCTGG
TGGTCCACCTGGCGGGCGTCACCGACCGCACCCTGGCCGAGGCCCTGGTGGGGCTTCGCGTCTACGCGGAGGTGGCCGAC
CTCCCCCCCTTGGAGGAGGGTCGGTACTACTACTTCGCCCTCATCGGCCTGCCCGTGTACGTGGAGGGGCGGCAGGTGGG
GGAGGTGGTGGACATCCTGGACGCCGGGGCCCAGGACGTCCTCATCATCCGGGGCGTAGGGGAGAGGCTCAGGGACCGGG
CGGAGCGGCTCGTGCCCCTGCAGGCCCCCTACGTGCGGGTGGAGGAGGGGAGCATCCACGTGGACCCCATCCCCGGCCTC
TTTGACTGA

Upstream 100 bases:

>100_bases
CATTGAGTCCCTCCGCACCGTGGTCCGGGCGTACGCCAAGCGCAAGGTGGGCGTGGAGGTGCGCTGACGCCGCGGCGGAA
GGACCTGGCATAATGAGGGT

Downstream 100 bases:

>100_bases
TGCGCTACACCGTCATCACCCTTTTCCCCAACCTCGTCCGCCCCTGGCTGGAGGAGTCCCTCCTGAAGAAGGCCCTGGAG
CGGGGCCTGATCCGGGTGGA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEVAD
LPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGL
FD

Sequences:

>Translated_162_residues
MRLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEVAD
LPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGL
FD
>Mature_162_residues
MRLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEVAD
LPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGL
FD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=30.5882352941176, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18073; Mature: 18073

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGV
CCEEECCCCCCCEEEECCCEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
TDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHCCCCEE
LIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGLFD
EEEECCCHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC
>Mature Secondary Structure
MRLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGV
CCEEECCCCCCCEEEECCCEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
TDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHCCCCEE
LIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGLFD
EEEECCCHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA