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The map label for this gene is paaD [H]

Identifier: 55980938

GI number: 55980938

Start: 914097

End: 914609

Strand: Reverse

Name: paaD [H]

Synonym: TTHA0969

Alternate gene names: 55980938

Gene position: 914609-914097 (Counterclockwise)

Preceding gene: 55980939

Following gene: 55980937

Centisome position: 49.45

GC content: 68.62

Gene sequence:

>513_bases
ATGGTCCCTCCTCGCGGAGATGCAGTCCGTGGCCCGCTGGGACCGGGAGGCGAAAGCGTGGTAGAGCGGTACTGGGAGGC
CCTAAAGGGGGTGAAGGACCCGGAGATCCCCGTCCTCAACATCGTGGAGATGGGGATGGTCCTGGGGGTGGAGGCCGAGG
GGAAAAGGGTCAAGGTGCGCTTCCGCCCCACCTTCTCCGGCTGCCCGGCCATCCAGCTCATCCGGGAGGAGATCGTGGGG
GCCCTCAAGGAGGCGGGGGCCGAGGAGGTGGAGGTGGAGGAGGCCCGCACCCCCTGGAGCACCGAGGCCATGACCGAGGA
GGCCCGGGAGAAGCTTCTCGGCTACGGCGTCGCCCCGCCCCTTCCCCTCCCCATGGCCGGGGAAGACCCTCCCTGCCCCC
GGTGCGGAAGCCGGGAGGTGGTCCTCAAGAACCCCTTCGGGGCCACGCTTTGCAAGACGCTCTACCAGTGCGCCGCTTGC
GGCGAGGTCTTTGAGGCCTTTAAGACCGTCTAG

Upstream 100 bases:

>100_bases
GCTACTTGGAGGAGGCCACCCGCCATTTGGAGCGCTCGGGGCTCAAGGTGCCGGAAGGGGGGTACGTGCCCAAGAGCCGG
AAGGAGCACACGGAGTACCT

Downstream 100 bases:

>100_bases
GGAAAGGACGCGCGATGAAGCTCCAAAGCTACCTCATGGGCGAGTGGCGGGAAGGCCAGGGCGAGGGCGTCCCCGTGCGG
GACGCGAGCACGGGGGAGGT

Product: phenylacetic acid degradation protein PaaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MVPPRGDAVRGPLGPGGESVVERYWEALKGVKDPEIPVLNIVEMGMVLGVEAEGKRVKVRFRPTFSGCPAIQLIREEIVG
ALKEAGAEEVEVEEARTPWSTEAMTEEAREKLLGYGVAPPLPLPMAGEDPPCPRCGSREVVLKNPFGATLCKTLYQCAAC
GEVFEAFKTV

Sequences:

>Translated_170_residues
MVPPRGDAVRGPLGPGGESVVERYWEALKGVKDPEIPVLNIVEMGMVLGVEAEGKRVKVRFRPTFSGCPAIQLIREEIVG
ALKEAGAEEVEVEEARTPWSTEAMTEEAREKLLGYGVAPPLPLPMAGEDPPCPRCGSREVVLKNPFGATLCKTLYQCAAC
GEVFEAFKTV
>Mature_170_residues
MVPPRGDAVRGPLGPGGESVVERYWEALKGVKDPEIPVLNIVEMGMVLGVEAEGKRVKVRFRPTFSGCPAIQLIREEIVG
ALKEAGAEEVEVEEARTPWSTEAMTEEAREKLLGYGVAPPLPLPMAGEDPPCPRCGSREVVLKNPFGATLCKTLYQCAAC
GEVFEAFKTV

Specific function: May be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation [H]

COG id: COG2151

COG function: function code R; Predicted metal-sulfur cluster biosynthetic enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI226510939, Length=158, Percent_Identity=41.7721518987342, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002744
- InterPro:   IPR011883 [H]

Pfam domain/function: PF01883 DUF59 [H]

EC number: NA

Molecular weight: Translated: 18353; Mature: 18353

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPPRGDAVRGPLGPGGESVVERYWEALKGVKDPEIPVLNIVEMGMVLGVEAEGKRVKVR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
FRPTFSGCPAIQLIREEIVGALKEAGAEEVEVEEARTPWSTEAMTEEAREKLLGYGVAPP
ECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
LPLPMAGEDPPCPRCGSREVVLKNPFGATLCKTLYQCAACGEVFEAFKTV
CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVPPRGDAVRGPLGPGGESVVERYWEALKGVKDPEIPVLNIVEMGMVLGVEAEGKRVKVR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
FRPTFSGCPAIQLIREEIVGALKEAGAEEVEVEEARTPWSTEAMTEEAREKLLGYGVAPP
ECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
LPLPMAGEDPPCPRCGSREVVLKNPFGATLCKTLYQCAACGEVFEAFKTV
CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9748275; 9278503; 10766858 [H]