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The map label for this gene is ywhC [H]

Identifier: 55980802

GI number: 55980802

Start: 799080

End: 799739

Strand: Direct

Name: ywhC [H]

Synonym: TTHA0833

Alternate gene names: 55980802

Gene position: 799080-799739 (Clockwise)

Preceding gene: 55980801

Following gene: 55980807

Centisome position: 43.2

GC content: 67.58

Gene sequence:

>660_bases
ATGATCGCCCTCCTGCAAGAAGACCCCCTCGCCTTCCTCCTCGCCTTCTCGGCCTTGGTGATGAGCCTCGTCCTCCACGA
GGTGGGCCACGCCTACGCCGCCCACCTCTTCGGGGACGACACGGCCAAGCGCCAGGGGCGGCTCAGCCTGAACCCCTTGC
GGCACCTGGACCCTTTGGGAACCCTCCTTCTCCTCCTCGTGGGCTTCGGCTGGGCGCGCCCCGTGCCCATTTATCCTCCC
GCCTTCAGGGCCTACCGCCTGGGCCTCTTCGCCGTCTCCGTGGCCGGGATCCTGGTGAACCTGGCCCTCGCCGTTCTCTT
CGCCTTGACGGTGCGGGGCCTCTTCGCCCTGGACCCGGAGGGGGTCTATGGGGCCTTCCGGGGGAGCGGGGGCTCCGCCC
TGGGGCTTCTGGCCCTCGCCGCCTACGTGGCGAGCTCCATCAACCTCGTCCTCGCCGTCTTCAACCTCCTCCCCATACCC
CCCCTGGACGGCTCCAAGATCCTCCAAAGCCTTCTCCCTTTGGCCTGGCACCCTTGGCTTTGGCGGCTGGAGCAGTACGC
CTGGCTTTCCTTCCTCCTCATCCTCACGGTCCTCAGGGGGCCCATCCAGGAGGTCTTGGCCTTCGCCCGCCGGGTCTTCT
TCACCCTCCTTTTGGGCTAA

Upstream 100 bases:

>100_bases
TCCTCGTCATCTTCCTCCTCCTCTCCTACACCGGCGTAACCGACGCGGTGGTCCGGGGGCTTTCCGGCCTCCTCGCCACC
CTCTACCGGGCCCTCGGGCT

Downstream 100 bases:

>100_bases
GTGTCCGCACGTCGGCTTCGCAGCATGAGGTGCGCGGAATAAGGCTTGGGAAGCTAATTTGGGGCCCCCACCGCGGCGAA
AGCCGCGGTGGGATACTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MIALLQEDPLAFLLAFSALVMSLVLHEVGHAYAAHLFGDDTAKRQGRLSLNPLRHLDPLGTLLLLLVGFGWARPVPIYPP
AFRAYRLGLFAVSVAGILVNLALAVLFALTVRGLFALDPEGVYGAFRGSGGSALGLLALAAYVASSINLVLAVFNLLPIP
PLDGSKILQSLLPLAWHPWLWRLEQYAWLSFLLILTVLRGPIQEVLAFARRVFFTLLLG

Sequences:

>Translated_219_residues
MIALLQEDPLAFLLAFSALVMSLVLHEVGHAYAAHLFGDDTAKRQGRLSLNPLRHLDPLGTLLLLLVGFGWARPVPIYPP
AFRAYRLGLFAVSVAGILVNLALAVLFALTVRGLFALDPEGVYGAFRGSGGSALGLLALAAYVASSINLVLAVFNLLPIP
PLDGSKILQSLLPLAWHPWLWRLEQYAWLSFLLILTVLRGPIQEVLAFARRVFFTLLLG
>Mature_219_residues
MIALLQEDPLAFLLAFSALVMSLVLHEVGHAYAAHLFGDDTAKRQGRLSLNPLRHLDPLGTLLLLLVGFGWARPVPIYPP
AFRAYRLGLFAVSVAGILVNLALAVLFALTVRGLFALDPEGVYGAFRGSGGSALGLLALAAYVASSINLVLAVFNLLPIP
PLDGSKILQSLLPLAWHPWLWRLEQYAWLSFLLILTVLRGPIQEVLAFARRVFFTLLLG

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23816; Mature: 23816

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALLQEDPLAFLLAFSALVMSLVLHEVGHAYAAHLFGDDTAKRQGRLSLNPLRHLDPLG
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHCCHHH
TLLLLLVGFGWARPVPIYPPAFRAYRLGLFAVSVAGILVNLALAVLFALTVRGLFALDPE
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVYGAFRGSGGSALGLLALAAYVASSINLVLAVFNLLPIPPLDGSKILQSLLPLAWHPWL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
WRLEQYAWLSFLLILTVLRGPIQEVLAFARRVFFTLLLG
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIALLQEDPLAFLLAFSALVMSLVLHEVGHAYAAHLFGDDTAKRQGRLSLNPLRHLDPLG
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHCCHHH
TLLLLLVGFGWARPVPIYPPAFRAYRLGLFAVSVAGILVNLALAVLFALTVRGLFALDPE
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVYGAFRGSGGSALGLLALAAYVASSINLVLAVFNLLPIPPLDGSKILQSLLPLAWHPWL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
WRLEQYAWLSFLLILTVLRGPIQEVLAFARRVFFTLLLG
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]