| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is livF [H]
Identifier: 55980557
GI number: 55980557
Start: 555111
End: 555887
Strand: Reverse
Name: livF [H]
Synonym: TTHA0588
Alternate gene names: 55980557
Gene position: 555887-555111 (Counterclockwise)
Preceding gene: 55980558
Following gene: 55980556
Centisome position: 30.05
GC content: 68.85
Gene sequence:
>777_bases ATGCTTTCCGTGGAGAACCTCAAGGTGGTCTACCGGGGGGTCATCCTGGCCCTGGACGGGGTCTCCCTGGAGGTGGGGGA GGGGGAGGCCGTGGCCCTCCTGGGCCCGAACGGAGCCGGGAAAAGCTCCTTGGTGCGGACCATCGCCGGCCTCCTCCCCA AGTTTGAGGGGCGGGTTCTGGACGGGAAGGTGCGCCTCTTCGGCCGGGAGGCCACCCACCTGGACCCGGTGGGGATCTCC CGGCTAGGCCTCACCGCCATCCTGGAGGGCCGCCCCCTCTTCCGCTACCTGACCCCGGTGGAGAACCTCATGGCCGCAGG CCACCGCCTCCCCCCAAAGGCGCTCAAGGAAGGGATGGAGGAGGTCTTCGCCCGCTTTCCCCGCCTCTACGAGCGCCGCC ACGAGCAGGCGGGCTACCTCTCGGGGGGGGAGCAGCAGATGCTCCTTTTGGGCATGGCCCTCCTCACGAGGCCGAGGCTT CTCGTGGTGGACGAGCCCTCCTTGGGCCTCGCCCCCAAGCTGGTGGGAGAGGTGATGCAGACCCTGGACGCCCTAAGGCG GGAAAAGGGGCTCTCCCTCCTCCTCGTGGAGCAAAACGCCCGGGCCGCCCTCGGCGTCGTGGACCGGGTGTACGTCCTGG AAAGGGGCCGCGTGGTCTTTGAGGGGAGCGCCAAGGAGGCCATGGAGGACCAGGACGTGATGGAGTTCTACCTGGGCAAG GAGGAGGTGGGCTTCCGCCAGGCGAGGCGGTACCGGAGGAGGAAGCGGTGGGTGTGA
Upstream 100 bases:
>100_bases TCCCCGGCTTCACCGAGGCCCTGCCCTTCGTGGTGGTCCTCCTCGTCCTCCTCGTGAGGCCCTACGGCCTCTTCGGGGAG CGGCAGATTGAGAGGGTGTG
Downstream 100 bases:
>100_bases TCCTAAAGGTGCAGGACCTCCACCTCTCCTTCAAGGGGGTAAAGGCCCTCTCGGGGGTGGCGTTCTCCGTGGCGGAGGGG GAGTTCTTCGCCGTCATCGG
Product: branched-chain amino acid ABC transport ATP-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MLSVENLKVVYRGVILALDGVSLEVGEGEAVALLGPNGAGKSSLVRTIAGLLPKFEGRVLDGKVRLFGREATHLDPVGIS RLGLTAILEGRPLFRYLTPVENLMAAGHRLPPKALKEGMEEVFARFPRLYERRHEQAGYLSGGEQQMLLLGMALLTRPRL LVVDEPSLGLAPKLVGEVMQTLDALRREKGLSLLLVEQNARAALGVVDRVYVLERGRVVFEGSAKEAMEDQDVMEFYLGK EEVGFRQARRYRRRKRWV
Sequences:
>Translated_258_residues MLSVENLKVVYRGVILALDGVSLEVGEGEAVALLGPNGAGKSSLVRTIAGLLPKFEGRVLDGKVRLFGREATHLDPVGIS RLGLTAILEGRPLFRYLTPVENLMAAGHRLPPKALKEGMEEVFARFPRLYERRHEQAGYLSGGEQQMLLLGMALLTRPRL LVVDEPSLGLAPKLVGEVMQTLDALRREKGLSLLLVEQNARAALGVVDRVYVLERGRVVFEGSAKEAMEDQDVMEFYLGK EEVGFRQARRYRRRKRWV >Mature_258_residues MLSVENLKVVYRGVILALDGVSLEVGEGEAVALLGPNGAGKSSLVRTIAGLLPKFEGRVLDGKVRLFGREATHLDPVGIS RLGLTAILEGRPLFRYLTPVENLMAAGHRLPPKALKEGMEEVFARFPRLYERRHEQAGYLSGGEQQMLLLGMALLTRPRL LVVDEPSLGLAPKLVGEVMQTLDALRREKGLSLLLVEQNARAALGVVDRVYVLERGRVVFEGSAKEAMEDQDVMEFYLGK EEVGFRQARRYRRRKRWV
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=29.7777777777778, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=29.7777777777778, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=29.5238095238095, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI21536376, Length=226, Percent_Identity=26.5486725663717, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI27262624, Length=160, Percent_Identity=31.875, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27262626, Length=160, Percent_Identity=31.875, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=28.9719626168224, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI46592964, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=29.7169811320755, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592971, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592915, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592978, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592956, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592898, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=229, Percent_Identity=27.9475982532751, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI45446740, Length=228, Percent_Identity=27.6315789473684, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI47078218, Length=228, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=26.9565217391304, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4505771, Length=231, Percent_Identity=26.4069264069264, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=231, Percent_Identity=26.4069264069264, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9961250, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=239, Percent_Identity=41.4225941422594, Blast_Score=173, Evalue=1e-44, Organism=Escherichia coli, GI1789864, Length=256, Percent_Identity=30.078125, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=29.9180327868852, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=29.8245614035088, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1788225, Length=238, Percent_Identity=31.9327731092437, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=31.3636363636364, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=31.2217194570136, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788506, Length=244, Percent_Identity=30.327868852459, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788165, Length=266, Percent_Identity=31.203007518797, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=30.672268907563, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790544, Length=226, Percent_Identity=27.8761061946903, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=29.5964125560538, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786253, Length=242, Percent_Identity=28.099173553719, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=27.9475982532751, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786872, Length=234, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081709, Length=218, Percent_Identity=27.5229357798165, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994883, Length=254, Percent_Identity=27.5590551181102, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=30.0429184549356, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=30.8695652173913, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1790162, Length=245, Percent_Identity=24.8979591836735, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=29.9107142857143, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787500, Length=234, Percent_Identity=28.6324786324786, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1790467, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=26.25, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789991, Length=253, Percent_Identity=25.296442687747, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=28.3783783783784, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790525, Length=240, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=24.3243243243243, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787759, Length=248, Percent_Identity=26.2096774193548, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786654, Length=236, Percent_Identity=27.1186440677966, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1788644, Length=224, Percent_Identity=27.6785714285714, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87081834, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI145693107, Length=245, Percent_Identity=26.1224489795918, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=24.7863247863248, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788472, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787547, Length=251, Percent_Identity=25.0996015936255, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1787105, Length=209, Percent_Identity=29.1866028708134, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=25.9090909090909, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788897, Length=196, Percent_Identity=29.5918367346939, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787112, Length=227, Percent_Identity=27.7533039647577, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=25.3112033195021, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1789751, Length=262, Percent_Identity=25.9541984732824, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=30.5164319248826, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71983516, Length=211, Percent_Identity=28.9099526066351, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71983510, Length=211, Percent_Identity=28.9099526066351, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71983523, Length=211, Percent_Identity=28.9099526066351, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17543740, Length=239, Percent_Identity=25.5230125523013, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193202349, Length=233, Percent_Identity=30.4721030042918, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115534520, Length=241, Percent_Identity=26.1410788381743, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115533608, Length=219, Percent_Identity=28.310502283105, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211015, Length=239, Percent_Identity=27.1966527196653, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71996809, Length=241, Percent_Identity=28.6307053941909, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211017, Length=239, Percent_Identity=27.1966527196653, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510237, Length=225, Percent_Identity=26.2222222222222, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193208177, Length=240, Percent_Identity=23.75, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=232, Percent_Identity=24.1379310344828, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17541710, Length=240, Percent_Identity=25.8333333333333, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71984940, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581191, Length=218, Percent_Identity=27.0642201834862, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24581189, Length=218, Percent_Identity=27.0642201834862, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24581193, Length=218, Percent_Identity=27.0642201834862, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24581195, Length=218, Percent_Identity=27.0642201834862, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24662800, Length=214, Percent_Identity=28.0373831775701, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI85816269, Length=213, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24580553, Length=213, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI85724864, Length=213, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24580555, Length=213, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI281363262, Length=221, Percent_Identity=28.9592760180996, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653245, Length=221, Percent_Identity=28.9592760180996, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574744, Length=222, Percent_Identity=23.8738738738739, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24641565, Length=253, Percent_Identity=28.4584980237154, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161076682, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161076684, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581617, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581615, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28573573, Length=224, Percent_Identity=27.2321428571429, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=27.2321428571429, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007184, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI221500365, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28701; Mature: 28701
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSVENLKVVYRGVILALDGVSLEVGEGEAVALLGPNGAGKSSLVRTIAGLLPKFEGRVL CCCHHHHHHHHHHHHEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCHHCCEEE DGKVRLFGREATHLDPVGISRLGLTAILEGRPLFRYLTPVENLMAAGHRLPPKALKEGME CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH EVFARFPRLYERRHEQAGYLSGGEQQMLLLGMALLTRPRLLVVDEPSLGLAPKLVGEVMQ HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH TLDALRREKGLSLLLVEQNARAALGVVDRVYVLERGRVVFEGSAKEAMEDQDVMEFYLGK HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCC EEVGFRQARRYRRRKRWV HHCCHHHHHHHHHHHCCC >Mature Secondary Structure MLSVENLKVVYRGVILALDGVSLEVGEGEAVALLGPNGAGKSSLVRTIAGLLPKFEGRVL CCCHHHHHHHHHHHHEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCHHCCEEE DGKVRLFGREATHLDPVGISRLGLTAILEGRPLFRYLTPVENLMAAGHRLPPKALKEGME CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH EVFARFPRLYERRHEQAGYLSGGEQQMLLLGMALLTRPRLLVVDEPSLGLAPKLVGEVMQ HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH TLDALRREKGLSLLLVEQNARAALGVVDRVYVLERGRVVFEGSAKEAMEDQDVMEFYLGK HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCC EEVGFRQARRYRRRKRWV HHCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]